SMTL ID : 4whm.1

Crystal structure of UDP-glucose: anthocyanidin 3-O-glucosyltransferase in complex with UDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 16 residues within 4Å: Chain A: S.16, C.270, G.272, T.273, V.274, A.299, W.325, V.326, Q.328, H.343, G.345, A.346, N.347, S.348, E.351 Ligands: GOL.2 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:S.16, A:T.273, A:V.274, A:V.326, A:V.326, A:Q.328, A:Q.328, A:N.347, A:N.347, A:S.348, A:E.351 Water bridges: A:S.16, A:T.273, A:S.329, A:S.329 Salt bridges: A:H.343, A:H.343 pi-Stacking: A:W.325

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: S.16, H.17, P.136, N.137, G.345, A.346, N.347, D.367 Ligands: UDP.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.16, A:S.16, A:H.17, A:A.346, A:N.347, A:D.367 GOL.3: 8 residues within 4Å: Chain A: V.178, P.179, Q.180, P.363, F.364, F.365, G.366, G.369 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.180, A:G.366 Water bridges: A:E.176, A:D.181

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 7 residues within 4Å: Chain A: P.33, N.34, T.35, S.36, N.57, N.58, R.60 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.58 Hydrogen bonds: A:P.33 Salt bridges: A:R.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hiromoto, T. et al., Structural basis for acceptor-substrate recognition of UDP-glucose: anthocyanidin 3-O-glucosyltransferase from Clitoria ternatea. Protein Sci. (2015)

Release Date

2015-01-21

Peptides

UDP-glucose:anthocyanidin 3-O-glucosyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-glucose:anthocyanidin 3-O-glucosyltransferase

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