SMTL ID : 4wjb.1 (1 other biounit)

X-ray crystal structure of a putative amidohydrolase/peptidase from Burkholderia cenocepacia

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.96, D.107, G.108, E.141, H.203 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.96, A:D.107, A:H.203, H2O.3 ZN.8: 4 residues within 4Å: Chain B: H.96, D.107, G.108, H.203 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.96, B:D.107, B:H.203, H2O.14

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.85, A.88, A.89, R.131 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.89 Water bridges: A:R.85, A:R.85, A:R.131 Salt bridges: A:R.85, A:R.131 SO4.3: 4 residues within 4Å: Chain A: Q.226, R.301 Chain B: H.239, N.288 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.226, B:N.288 Salt bridges: A:R.301, B:H.239 SO4.9: 3 residues within 4Å: Chain B: R.352, R.356, H.362 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.356, B:H.362 SO4.10: 2 residues within 4Å: Chain B: R.84, R.85 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.84, B:R.85

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: H.239, N.288 Chain B: R.301, A.369, G.370 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:N.288, B:R.301, B:R.301, B:G.370 EDO.5: 3 residues within 4Å: Chain A: R.80, P.90, Y.194 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.80, A:R.80 Water bridges: A:E.189 EDO.6: 9 residues within 4Å: Chain A: M.92, T.93, G.94, V.136, W.138, Y.200, E.201, D.372, A.373 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.200, A:E.201 EDO.7: 6 residues within 4Å: Chain A: A.198, Y.200, R.346, C.347, S.420, E.423 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.200

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lukacs, C.M. et al., X-ray crystal structure of a putative amidohydrolase/peptidase from Burkholderia cenocepacia. To Be Published

Release Date

2014-10-08

Peptides

Putative amidohydrolase/peptidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Putative amidohydrolase/peptidase

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