SMTL ID : 4wjt.1

Stationary Phase Survival Protein YuiC from B.subtilis complexed with NAG

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.21 Å

Oligo State

homo-dimer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.1: 11 residues within 4Å: Chain A: T.49, K.51, G.59, L.60, T.61, Y.62, V.67, D.100, T.101, G.102, S.103 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:T.49, A:V.67 Hydrogen bonds: A:K.51, A:L.60, A:D.100 Water bridges: A:G.59, A:S.103 NAG.3: 11 residues within 4Å: Chain B: S.48, T.49, K.51, L.60, T.61, Y.62, V.67, D.100, T.101, G.102, S.103 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:V.67 Hydrogen bonds: B:K.51, B:L.60, B:D.100, B:T.101 Water bridges: B:T.49, B:S.103

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 6 residues within 4Å: Chain A: Q.161, Y.162 Chain B: E.24, R.69, N.92, Y.93 1 PLIP interactions: 1 interactions with chain B Water bridges: B:R.69 DMS.5: 3 residues within 4Å: Chain B: E.151, T.152, K.153 1 PLIP interactions: 1 interactions with chain B Water bridges: B:K.153 DMS.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) DMS.7: 4 residues within 4Å: Chain A: L.155 Chain B: W.29, Y.32, L.95 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.32

1 x 3P9: (2S)-2-{[(2S)-2-{[(2R)-2-hydroxypropyl]oxy}propyl]oxy}propan-1-ol(Non-covalent)

3P9.4: 4 residues within 4Å: Chain B: Y.58, G.59, K.66, V.67 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Quay, D.H. et al., Structure of the stationary phase survival protein YuiC from B.subtilis. Bmc Struct.Biol. (2015)

Release Date

2015-07-08

Peptides

Uncharacterized protein YuiC: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uncharacterized protein YuiC