SMTL ID : 4wkn.1

Crystal structure of Helicobacter pylori 5'-methylthioadenosine/S-adenosyl homocysteine nucleosidase (MTAN) complexed with methylthio-DADMe-Immucillin-A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x TDI: (3R,4S)-1-[(4-AMINO-5H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)METHYL]-4-[(METHYLSULFANYL)METHYL]PYRROLIDIN-3-OL(Non-covalent)

TDI.1: 19 residues within 4Å: Chain A: A.24, M.25, I.67, V.93, A.94, G.95, Q.167, F.168, V.169, V.187, E.188, M.189, E.190, S.212, D.213, A.215, F.223 Chain B: L.119, F.122 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:V.169, A:D.213, A:D.213 Water bridges: A:R.209, A:R.209 Salt bridges: A:E.28, A:E.190 TDI.2: 19 residues within 4Å: Chain A: L.119, F.122 Chain B: A.24, M.25, I.67, V.93, A.94, G.95, Q.167, F.168, V.169, V.187, E.188, M.189, E.190, S.212, D.213, A.215, F.223 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:V.169, B:D.213, B:D.213 Water bridges: B:R.209, B:R.209 Salt bridges: B:E.28, B:E.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, S. et al., New Antibiotic Candidates against Helicobacter pylori. J.Am.Chem.Soc. (2015)

Release Date

2015-11-25

Peptides

Aminodeoxyfutalosine nucleosidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Aminodeoxyfutalosine nucleosidase

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