SMTL ID : 4wku.1

n-Alkylboronic Acid Inhibitors Reveal Determinants of Ligand Specificity in the Quorum-Quenching and Siderophore Biosynthetic Enzyme PvdQ

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

16 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: E.66, L.67, D.68, D.153 Ligand excluded by PLIP GOL.2: 6 residues within 4Å: Chain A: W.78, L.79, Q.81, R.140 Chain B: Q.125, L.153 Ligand excluded by PLIP GOL.3: 4 residues within 4Å: Chain A: R.50, E.52, N.80, R.137 Ligand excluded by PLIP GOL.4: 3 residues within 4Å: Chain A: W.89, T.132, D.133 Ligand excluded by PLIP GOL.6: 9 residues within 4Å: Chain A: E.45, S.64, A.65, R.141 Chain B: P.25, N.27, G.28, A.29, M.30 Ligand excluded by PLIP GOL.7: 6 residues within 4Å: Chain B: R.42, L.43, D.44, S.61, N.166, Q.167 Ligand excluded by PLIP GOL.8: 6 residues within 4Å: Chain A: L.70, I.74, V.156 Chain B: V.119, E.120, H.121 Ligand excluded by PLIP GOL.9: 5 residues within 4Å: Chain A: E.145, G.146, Q.150 Chain B: V.70, W.186 Ligand excluded by PLIP GOL.10: 5 residues within 4Å: Chain B: R.149, A.238, W.239, A.248, G.249 Ligand excluded by PLIP GOL.11: 2 residues within 4Å: Chain B: D.513, E.516 Ligand excluded by PLIP GOL.12: 3 residues within 4Å: Chain B: Q.255, G.283, F.284 Ligand excluded by PLIP GOL.13: 4 residues within 4Å: Chain B: I.127, Y.128, S.235, A.238 Ligand excluded by PLIP GOL.14: 8 residues within 4Å: Chain B: S.11, A.12, D.13, M.17, L.311, E.312, A.313, T.486 Ligand excluded by PLIP GOL.15: 6 residues within 4Å: Chain B: F.380, A.381, L.383, G.385, A.386, W.387 Ligand excluded by PLIP GOL.16: 4 residues within 4Å: Chain B: R.175, V.258, L.259, L.260 Ligand excluded by PLIP GOL.17: 4 residues within 4Å: Chain B: L.364, D.365, D.438, A.450 Ligand excluded by PLIP

1 x 3QJ: hexyl(trihydroxy)borate(1-)(Covalent)

3QJ.5: 7 residues within 4Å: Chain B: S.1, H.23, F.24, H.68, T.69, V.70, N.269 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:F.24, B:F.24, B:F.24, B:H.68 Hydrogen bonds: B:S.1, B:H.23, B:V.70, B:N.269 Water bridges: B:H.23, B:N.269, B:R.297

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Clevenger, K.D. et al., n-Alkylboronic Acid Inhibitors Reveal Determinants of Ligand Specificity in the Quorum-Quenching and Siderophore Biosynthetic Enzyme PvdQ. Biochemistry (2014)

Release Date

2014-11-12

Peptides

Acyl-homoserine lactone acylase PvdQ: A
Acyl-homoserine lactone acylase PvdQ: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Acyl-homoserine lactone acylase PvdQ

Acyl-homoserine lactone acylase PvdQ

Related Entries With Identical Sequence