SMTL ID : 4wm7.3 (4 other biounits)

Crystal Structure of Human Enterovirus D68 in Complex with Pleconaril

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.32 Å

Oligo State

hetero-6-6-6-6-mer

Ligands

6 x W11: 3-{3,5-DIMETHYL-4-[3-(3-METHYL-ISOXAZOL-5-YL)-PROPOXY]-PHENYL}-5-TRIFLUOROMETHYL-[1,2,4]OXADIAZOLE(Non-covalent)

W11.1: 16 residues within 4Å: Chain A: W.93, I.95, T.97, F.115, I.119, I.121, A.145, F.147, A.169, V.171, M.182, I.184, Y.193, I.217, L.220 Chain C: V.24 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.93, A:I.95, A:I.95, A:I.119, A:I.119, A:F.147, A:I.184, A:I.184, A:I.184, A:I.217 pi-Stacking: A:Y.193 Halogen bonds: A:A.145 W11.2: 16 residues within 4Å: Chain E: W.93, I.95, T.97, F.115, I.119, I.121, A.145, F.147, A.169, V.171, M.182, I.184, Y.193, I.217, L.220 Chain G: V.24 12 PLIP interactions: 12 interactions with chain E Hydrophobic interactions: E:W.93, E:I.95, E:I.95, E:I.119, E:I.119, E:F.147, E:I.184, E:I.184, E:I.184, E:I.217 pi-Stacking: E:Y.193 Halogen bonds: E:A.145 W11.3: 16 residues within 4Å: Chain I: W.93, I.95, T.97, F.115, I.119, I.121, A.145, F.147, A.169, V.171, M.182, I.184, Y.193, I.217, L.220 Chain K: V.24 12 PLIP interactions: 12 interactions with chain I Hydrophobic interactions: I:W.93, I:I.95, I:I.95, I:I.119, I:I.119, I:F.147, I:I.184, I:I.184, I:I.184, I:I.217 pi-Stacking: I:Y.193 Halogen bonds: I:A.145 W11.4: 16 residues within 4Å: Chain M: W.93, I.95, T.97, F.115, I.119, I.121, A.145, F.147, A.169, V.171, M.182, I.184, Y.193, I.217, L.220 Chain O: V.24 12 PLIP interactions: 12 interactions with chain M Hydrophobic interactions: M:W.93, M:I.95, M:I.95, M:I.119, M:I.119, M:F.147, M:I.184, M:I.184, M:I.184, M:I.217 pi-Stacking: M:Y.193 Halogen bonds: M:A.145 W11.5: 16 residues within 4Å: Chain Q: W.93, I.95, T.97, F.115, I.119, I.121, A.145, F.147, A.169, V.171, M.182, I.184, Y.193, I.217, L.220 Chain S: V.24 12 PLIP interactions: 12 interactions with chain Q Hydrophobic interactions: Q:W.93, Q:I.95, Q:I.95, Q:I.119, Q:I.119, Q:F.147, Q:I.184, Q:I.184, Q:I.184, Q:I.217 pi-Stacking: Q:Y.193 Halogen bonds: Q:A.145 W11.6: 16 residues within 4Å: Chain U: W.93, I.95, T.97, F.115, I.119, I.121, A.145, F.147, A.169, V.171, M.182, I.184, Y.193, I.217, L.220 Chain W: V.24 12 PLIP interactions: 12 interactions with chain U Hydrophobic interactions: U:W.93, U:I.95, U:I.95, U:I.119, U:I.119, U:F.147, U:I.184, U:I.184, U:I.184, U:I.217 pi-Stacking: U:Y.193 Halogen bonds: U:A.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., Virus structure. Structure and inhibition of EV-D68, a virus that causes respiratory illness in children. Science (2015)

Release Date

2015-01-14

Peptides

VP1: AEIMQU
VP2: BFJNRV
VP3: CGKOSW
VP4: DHLPTX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

M
A

Q
A

U
A

B
B

F
B

J
B

N
B

R
B

V
B

C
C

G
C

K
C

O
C

S
C

W
C

D
D

H
D

L
D

P
D

T
D

X
D

VP1

VP2

VP3

VP4

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