SMTL ID : 4wnr.1

Structure of methanosarcina barkeri Roco2 RocCORdC bound to GDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 19 residues within 4Å: Chain A: G.50, E.51, A.52, G.53, K.54, T.55, S.56, F.66, G.68, E.70, H.71, N.150, K.151, D.153, E.154, S.179, C.180, K.181 Ligands: MG.2 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:E.51, A:A.52, A:G.53, A:K.54, A:T.55, A:T.55, A:S.56, A:S.56, A:E.70, A:E.70, A:H.71, A:N.150, A:K.151, A:K.151, A:C.180, A:K.181 Water bridges: A:Q.74, A:Q.74 Salt bridges: A:K.54, A:D.153, A:E.154 pi-Stacking: A:F.66, A:F.66 pi-Cation interactions: A:K.151

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: T.55, T.73, Q.74 Ligands: GDP.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.55, H2O.1, H2O.1, H2O.1

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: K.134, R.137, K.168 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.134, A:R.137, A:R.137

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: R.162, F.175, F.176, R.177 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.177 Salt bridges: A:R.162 SO4.5: 2 residues within 4Å: Chain A: K.192, K.195 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.192, A:K.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Terheyden, S. et al., Revisiting the Roco G-protein cycle. Biochem.J. (2015)

Release Date

2014-11-05

Peptides

Leucine-rich-repeat protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leucine-rich-repeat protein