SMTL ID : 4wop.1 (1 other biounit)

Nucleotide Triphosphate Promiscuity in Mycobacterium tuberculosis Dethiobiotin Synthetase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.39 Å

Oligo State

homo-dimer

Ligands

1 x CTP: CYTIDINE-5'-TRIPHOSPHATE(Non-covalent)

CTP.1: 17 residues within 4Å: Chain A: G.12, V.13, G.14, K.15, T.16, V.17, K.37, D.49, E.108, G.111, G.169, S.170, L.196, P.197, G.199, A.200, A.201 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:G.12, A:V.13, A:G.14, A:K.15, A:T.16, A:T.16, A:T.16, A:V.17, A:G.111, A:G.169, A:G.199, A:A.200, A:A.201 Water bridges: A:K.37, A:K.37, A:K.37 Salt bridges: A:K.15, A:K.15, A:K.37

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 8 residues within 4Å: Chain A: L.143, G.144, T.145, L.146, N.147, N.182 Chain B: A.73, V.115 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.144, A:L.146, A:N.147, A:N.182 Water bridges: A:N.147 SO4.3: 7 residues within 4Å: Chain A: A.73, V.115 Chain B: L.143, G.144, T.145, L.146, N.147 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.144, B:L.146, B:N.147 Water bridges: B:N.147 SO4.4: 5 residues within 4Å: Chain B: G.12, V.13, G.14, K.15, T.16 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:G.12, B:V.13, B:G.14, B:K.15, B:T.16 Water bridges: B:V.17, B:V.17 Salt bridges: B:K.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Salaemae, W. et al., Nucleotide triphosphate promiscuity in Mycobacterium tuberculosis dethiobiotin synthetase. Tuberculosis (Edinb) (2015)

Release Date

2015-04-08

Peptides

ATP-dependent dethiobiotin synthetase BioD: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ATP-dependent dethiobiotin synthetase BioD

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