SMTL ID : 4wpd.1

X-ray Crystal Structure of CYP119 complexed with 4-(4-flourophenyl)-1H-imidazole

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x 3SQ: 4-(4-fluorophenyl)-1H-imidazole(Non-covalent)

3SQ.1: 9 residues within 4Å: Chain A: A.152, L.155, G.156, A.209, G.210, T.213, V.353, L.354 Ligands: HEM.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.155, A:L.354 Hydrogen bonds: A:T.213 Water bridges: A:T.213 3SQ.4: 10 residues within 4Å: Chain B: A.152, L.155, G.156, A.209, G.210, T.213, V.254, V.353, L.354 Ligands: HEM.3 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:L.155, B:T.213, B:V.254, B:L.354 Water bridges: B:T.213

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.2: 25 residues within 4Å: Chain A: M.68, L.69, H.76, R.80, F.87, I.130, L.205, L.206, G.210, T.213, T.214, L.217, P.253, T.257, R.259, S.309, F.310, G.311, I.314, H.315, C.317, L.318, G.319, A.323 Ligands: 3SQ.1 18 PLIP interactions: 18 interactions with chain A, Hydrophobic interactions: A:F.87, A:F.87, A:I.130, A:L.205, A:L.217, A:P.253, A:P.253, A:F.310, A:L.318, A:A.323 Water bridges: A:S.41, A:T.257, A:T.257 Salt bridges: A:H.76, A:R.80, A:R.259, A:H.315 Metal complexes: A:C.317 HEM.3: 26 residues within 4Å: Chain B: M.68, L.69, H.76, R.80, F.87, I.130, L.205, L.206, G.210, T.213, T.214, L.217, P.253, V.254, T.257, R.259, S.309, F.310, G.311, I.314, H.315, C.317, L.318, G.319, A.323 Ligands: 3SQ.4 19 PLIP interactions: 19 interactions with chain B, Hydrophobic interactions: B:L.69, B:F.87, B:F.87, B:I.130, B:L.205, B:L.217, B:V.254, B:F.310, B:L.318, B:A.323 Water bridges: B:S.41, B:T.257, B:T.257 Salt bridges: B:H.76, B:R.80, B:R.259, B:H.315, B:H.315 Metal complexes: B:C.317

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Basudhar, D. et al., TWO DIMENTIONAL NMR AND X-RAY ANALYSIS OF CYP119 LIGAND DEPENDENT CONFORMATIONAL DYNAMICS. To Be Published

Release Date

2015-02-18

Peptides

Cytochrome P450 119: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cytochrome P450 119

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