SMTL ID : 4wsz.1

Crystal structure of the DNA binding domains of wild type LiaR from E. faecalis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

homo-dimer

Ligands

2 x PR: PRASEODYMIUM ION(Non-covalent)

PR.1: 1 residues within 4Å: Chain A: D.52 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.52, A:D.52, H2O.1, H2O.1 PR.3: 2 residues within 4Å: Chain B: D.52 Ligands: ACT.4 5 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: B:D.52, B:D.52, H2O.4, H2O.5, ACT.4

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: D.50, D.52 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.50 Water bridges: A:D.52, A:D.52, A:D.52, A:D.52

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 3 residues within 4Å: Chain B: D.50, D.52 Ligands: PR.3 1 PLIP interactions: 1 interactions with chain B Water bridges: B:D.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davlieva, M. et al., A variable DNA recognition site organization establishes the LiaR-mediated cell envelope stress response of enterococci to daptomycin. Nucleic Acids Res. (2015)

Release Date

2015-05-06

Peptides

Response regulator receiver domain protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Response regulator receiver domain protein