SMTL ID : 4wuv.1

Crystal Structure of a putative D-Mannonate oxidoreductase from Haemophilus influenza (Avi_5165, TARGET EFI-513796) with bound NAD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 29 residues within 4Å: Chain A: G.44, G.46, G.47, V.48, L.49, C.50, D.68, L.69, N.70, A.73, T.93, N.94, V.95, L.96, G.121, A.122, G.123, G.124, L.161, N.162, I.188, S.189, S.190, Y.203, K.207, P.233, G.234, L.236 Ligands: EDO.3 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:P.233, A:P.233 Hydrogen bonds: A:G.46, A:V.48, A:L.49, A:L.69, A:N.70, A:N.94, A:V.95, A:N.162, A:K.207 Water bridges: A:G.46, A:G.47, A:G.47, A:N.70, A:N.94, A:N.241 NAD.4: 29 residues within 4Å: Chain B: G.44, G.46, G.47, V.48, L.49, C.50, D.68, L.69, N.70, T.93, N.94, V.95, L.96, G.121, A.122, G.123, G.124, L.161, N.162, I.188, S.189, S.190, Y.203, K.207, P.233, G.234, L.236, Q.240 Ligands: EDO.6 23 PLIP interactions: 23 interactions with chain B Hydrophobic interactions: B:L.49, B:P.233, B:P.233 Hydrogen bonds: B:G.46, B:G.46, B:V.48, B:L.49, B:L.69, B:N.70, B:N.94, B:V.95, B:G.121, B:N.162, B:Y.203, B:K.207, B:Q.240 Water bridges: B:G.47, B:C.50, B:N.70, B:N.94, B:S.238, B:Q.240, B:N.241

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: F.159, N.160, Y.163, L.164 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.164 EDO.3: 9 residues within 4Å: Chain A: S.190, M.191, N.192, L.197, Y.203, P.233, G.234, F.235 Ligands: NAD.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.190 Water bridges: A:N.192 EDO.5: 4 residues within 4Å: Chain B: F.159, N.160, Y.163, L.164 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.164 Water bridges: B:N.160, B:N.160 EDO.6: 9 residues within 4Å: Chain B: S.190, M.191, N.192, L.197, Y.203, P.233, G.234, F.235 Ligands: NAD.4 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.190, B:N.192, B:P.233

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yadava, U. et al., Crystal structure of a putative D-Mannonate oxidoreductase from Haemophilus influenza (Avi_5165, TARGET EFI-513796) with bound NAD. To be published

Release Date

2014-11-26

Peptides

2-hydroxycyclohexanecarboxyl-CoA dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

2-hydroxycyclohexanecarboxyl-CoA dehydrogenase