- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.77 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.2: 8 residues within 4Å:- Chain A: T.109, Y.113, R.243, W.360, E.364, R.420
- Chain C: R.279, E.280
8 PLIP interactions:6 interactions with chain A, 2 interactions with chain C- Hydrophobic interactions: A:T.109, A:W.360, C:R.279
- Hydrogen bonds: A:R.243, C:E.280
- Water bridges: A:R.243, A:E.364, A:R.420
MPD.3: 9 residues within 4Å:- Chain A: G.100, W.141, A.145, R.146, F.214, Y.219, P.221, I.224, Y.225
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:F.214, A:I.224
- Hydrogen bonds: A:G.100, A:R.146
MPD.6: 8 residues within 4Å:- Chain A: R.279, E.280
- Chain B: T.109, Y.113, R.243, W.360, E.364, R.420
8 PLIP interactions:3 interactions with chain A, 5 interactions with chain B- Hydrophobic interactions: A:R.279, B:T.109, B:W.360
- Hydrogen bonds: A:E.280, B:R.243
- Water bridges: A:R.279, B:R.243, B:R.420
MPD.7: 9 residues within 4Å:- Chain B: G.100, W.141, A.145, R.146, F.214, Y.219, P.221, I.224, Y.225
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:F.214, B:I.224
- Hydrogen bonds: B:G.100, B:R.146
MPD.10: 8 residues within 4Å:- Chain B: R.279, E.280
- Chain C: T.109, Y.113, R.243, W.360, E.364, R.420
8 PLIP interactions:3 interactions with chain B, 5 interactions with chain C- Hydrophobic interactions: B:R.279, C:T.109, C:W.360
- Hydrogen bonds: B:E.280, C:R.243
- Water bridges: B:R.279, C:R.243, C:R.420
MPD.11: 9 residues within 4Å:- Chain C: G.100, W.141, A.145, R.146, F.214, Y.219, P.221, I.224, Y.225
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:F.214, C:I.224
- Hydrogen bonds: C:G.100, C:R.146
- 3 x GLC: alpha-D-glucopyranose(Non-covalent)
GLC.4: 12 residues within 4Å:- Chain A: P.23, W.32, W.34, D.35, Q.103, G.163, D.165, Y.349, W.350, E.393, F.408, W.410
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:W.34, A:Q.103, A:G.163, A:D.165, A:Y.349, A:Y.349
GLC.8: 12 residues within 4Å:- Chain B: P.23, W.32, W.34, D.35, Q.103, G.163, D.165, Y.349, W.350, E.393, F.408, W.410
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:W.34, B:Q.103, B:G.163, B:D.165, B:Y.349, B:Y.349
GLC.12: 12 residues within 4Å:- Chain C: P.23, W.32, W.34, D.35, Q.103, G.163, D.165, Y.349, W.350, E.393, F.408, W.410
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:W.34, C:Q.103, C:G.163, C:D.165, C:Y.349, C:Y.349
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Miyazaki, T. et al., Crystal structure and substrate-binding mode of GH63 mannosylglycerate hydrolase from Thermus thermophilus HB8. J.Struct.Biol. (2015)
- Release Date
- 2015-03-11
- Peptides
- Uncharacterized protein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.77 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 3 x GLC: alpha-D-glucopyranose(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Miyazaki, T. et al., Crystal structure and substrate-binding mode of GH63 mannosylglycerate hydrolase from Thermus thermophilus HB8. J.Struct.Biol. (2015)
- Release Date
- 2015-03-11
- Peptides
- Uncharacterized protein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A