SMTL ID : 4ww5.1

Crystal structure of binary complex Bud32-Cgi121 in complex with AMPP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-oligomer

Ligands

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 14 residues within 4Å: Chain A: I.50, K.52, R.54, R.72, E.76, P.92, E.107, F.108, L.109, F.119, I.181, D.182, F.183, G.184 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:K.52, A:R.54, A:R.72, A:E.107, A:L.109, A:G.184 Water bridges: A:K.52, A:D.182 Salt bridges: A:K.52

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 6 residues within 4Å: Chain A: L.199, L.202, E.203, N.218, I.221, M.222 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.199 ACT.3: 4 residues within 4Å: Chain A: Y.200, E.203, L.207, R.251 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:R.251 Hydrogen bonds: A:E.203 Salt bridges: A:R.204, A:R.251 ACT.7: 5 residues within 4Å: Chain B: Y.145, E.147, Q.163, D.164, V.165 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.163 Water bridges: B:V.165

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: S.135, D.136 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.136 Water bridges: A:S.135, A:L.137 SO4.5: 4 residues within 4Å: Chain A: R.143, K.216, W.220, E.223 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.220 Salt bridges: A:R.143 SO4.8: 1 residues within 4Å: Ligands: SO4.9 1 PLIP interactions: 1 interactions with chain B Water bridges: B:N.140 SO4.9: 4 residues within 4Å: Chain B: I.134, E.135, N.140 Ligands: SO4.8 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.135, B:N.140 Water bridges: B:E.135, B:E.135 Salt bridges: B:E.135 SO4.10: 5 residues within 4Å: Chain A: Y.100 Chain B: E.63, N.67, R.70, R.179 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.67, A:Y.100 Water bridges: B:R.70, B:R.70, B:R.70, B:R.179, B:R.179 Salt bridges: B:R.70

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 7 residues within 4Å: Chain A: Y.84, L.89, C.90, V.91, E.107, H.179 Chain B: R.170 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:R.170, A:L.89, A:V.91, A:H.179 Water bridges: B:R.170, B:R.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, W. et al., Crystal structures of the Gon7/Pcc1 and Bud32/Cgi121 complexes provide a model for the complete yeast KEOPS complex. Nucleic Acids Res. (2015)

Release Date

2015-03-18

Peptides

EKC/KEOPS complex subunit BUD32: A
EKC/KEOPS complex subunit CGI121: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

EKC/KEOPS complex subunit BUD32

EKC/KEOPS complex subunit CGI121

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