SMTL ID : 4wy2.1

Crystal structure of universal stress protein E from Proteus mirabilis in complex with UDP-3-O-[(3R)-3-hydroxytetradecanoyl]-N-acetyl-alpha-glucosamine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x U20: uridine-5'-diphosphate-3-O-(R-3-hydroxymyristoyl)-N-acetyl-D-glucosamine(Non-covalent)

U20.1: 14 residues within 4Å: Chain A: D.19, D.20, Q.21, R.25, R.26, Y.29, Q.78, Y.81, Y.82, W.146, W.153, T.183, S.187, Q.191 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:Y.29, A:Y.29, A:Y.82, A:W.146, A:W.153, A:W.153, A:W.153, A:W.153 Hydrogen bonds: A:D.20, A:Q.21, A:Q.78 Water bridges: A:R.25, A:R.25, A:R.25, A:Q.32, A:Y.81, A:W.153 Salt bridges: A:R.25, A:R.25 U20.6: 14 residues within 4Å: Chain B: D.19, D.20, Q.21, R.25, R.26, Y.29, Q.78, Y.81, Y.82, W.146, W.153, T.183, S.187, Q.191 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:Y.29, B:Y.29, B:Y.82, B:W.146, B:W.153, B:W.153, B:W.153, B:W.153 Hydrogen bonds: B:Q.21, B:Q.78, B:Y.82 Water bridges: B:R.25, B:R.25, B:R.25, B:Q.32, B:Y.81, B:W.153 Salt bridges: B:R.25, B:R.25

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: I.207, I.209, A.210, I.211 Chain B: A.62, K.65, G.66 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.211 Water bridges: A:I.209, A:I.209, A:E.212 GOL.4: 7 residues within 4Å: Chain A: A.163, N.164, P.254, I.258, L.272, G.273, L.285 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.163, A:G.273 Water bridges: A:N.164, A:N.164, A:A.201 GOL.7: 7 residues within 4Å: Chain A: A.62, K.65, G.66 Chain B: I.207, I.209, A.210, I.211 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:I.211 Water bridges: B:I.209, B:I.209, B:E.212 GOL.9: 7 residues within 4Å: Chain B: A.163, N.164, P.254, I.258, L.272, G.273, L.285 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:A.163, B:G.273 Water bridges: B:N.164, B:N.164, B:A.201

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: Q.191, K.192 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain B: Q.191, K.192 Ligand excluded by PLIP

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 4 residues within 4Å: Chain A: T.247, H.248, V.249, K.250 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.249 Salt bridges: A:H.248, A:K.250 SO4.10: 4 residues within 4Å: Chain B: T.247, H.248, V.249, K.250 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.249 Salt bridges: B:H.248, B:K.250

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shumilin, I.A. et al., Crystal structure of universal stress protein E from Proteus mirabilis incomplex withUDP-3-O-[(3R)-3-hydroxytetradecanoyl]-N-acetyl-alpha-glucosamine. to be published

Release Date

2014-11-26

Peptides

Universal stress protein E: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Universal stress protein E

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