SMTL ID : 4x1d.2 (1 other biounit)

Ytterbium-bound human serum transferrin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x YB: YTTERBIUM (III) ION(Non-covalent)

YB.1: 5 residues within 4Å: Chain A: D.392, Y.426, Y.517, H.585 Ligands: MLI.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.392, A:Y.426, A:Y.517, A:H.585

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.2: 10 residues within 4Å: Chain A: D.392, Y.426, T.452, R.456, T.457, A.458, G.459, Y.517, H.585 Ligands: YB.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:R.456, A:Y.517 Hydrogen bonds: A:T.457, A:T.457, A:A.458, A:G.459 Salt bridges: A:R.456, A:H.585

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: C.227, L.228, D.229, D.240, C.241, H.242 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.228, A:D.229, A:D.229, A:H.242, A:H.242, A:H.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, M. et al., Anion clamp" allows flexible protein to impose coordination geometry on metal ions. Chem.Commun.(Camb.) (2015)

Release Date

2015-04-08

Peptides

Serotransferrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Serotransferrin

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