SMTL ID : 4x63.1

Crystal structure of PRMT5:MEP50 with EPZ015666 and SAH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.05 Å

Oligo State

hetero-oligomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 21 residues within 4Å: Chain A: L.323, Y.332, E.336, K.341, Y.342, G.373, A.374, G.375, P.378, L.379, E.400, K.401, N.402, S.426, D.427, M.428, R.429, E.443, L.444, C.457 Ligands: 3XV.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Y.332, A:Y.332, A:G.373, A:K.401, A:D.427, A:M.428, A:R.429, A:E.443 Salt bridges: A:K.341

1 x 3XV: N-[(2S)-3-(3,4-dihydroisoquinolin-2(1H)-yl)-2-hydroxypropyl]-6-(oxetan-3-ylamino)pyrimidine-4-carboxamide(Non-covalent)

3XV.2: 20 residues within 4Å: Chain A: F.308, Y.312, Q.317, L.320, L.327, Y.332, V.334, F.335, K.341, E.443, L.445, G.446, S.447, E.452, V.511, F.585, S.586, W.587, F.588 Ligands: SAH.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.327, A:Y.332, A:F.335, A:F.335, A:F.588 Hydrogen bonds: A:E.452, A:F.585, A:F.588 Salt bridges: A:E.443, A:E.452 pi-Stacking: A:F.335 pi-Cation interactions: A:F.335

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chan-Penebre, E. et al., A selective inhibitor of PRMT5 with in vivo and in vitro potency in MCL models. Nat.Chem.Biol. (2015)

Release Date

2015-04-22

Peptides

Protein arginine N-methyltransferase 5: A
Methylosome protein 50: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein arginine N-methyltransferase 5

Methylosome protein 50

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