SMTL ID : 4x6g.1 (1 other biounit)

Full-length OxyR C199D from pseudomonas aeruginosa

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x PEO: HYDROGEN PEROXIDE(Non-functional Binders)

PEO.1: 5 residues within 4Å: Chain A: F.134, T.135, G.203, H.204, D.205 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.135, A:T.135, A:D.205 Water bridges: A:Y.105, A:Y.105, A:D.205, A:F.206 PEO.5: 5 residues within 4Å: Chain B: F.134, T.135, G.203, H.204, D.205 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:T.135, B:T.135, B:D.205 Water bridges: B:Y.105, B:T.135, B:H.136, B:H.136, B:G.203, B:D.205 PEO.9: 5 residues within 4Å: Chain C: F.134, T.135, G.203, H.204, D.205 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:T.135, C:T.135, C:D.205, C:D.205 Water bridges: C:Y.105, C:Y.105 PEO.12: 6 residues within 4Å: Chain D: I.104, F.134, T.135, G.203, H.204, D.205 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:T.135, D:T.135, D:D.205, D:D.205

10 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: Y.105, H.204, S.230, S.231, S.232 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.231 Water bridges: A:S.230 GOL.3: 5 residues within 4Å: Chain A: P.165, L.166, D.168, T.277, R.300 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.168, A:T.277, A:R.300 Water bridges: A:L.166 GOL.4: 4 residues within 4Å: Chain A: Q.82, R.85 Chain D: H.6, M.7 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:Q.82, A:R.85, D:M.7 Water bridges: A:R.13, A:R.13 GOL.6: 6 residues within 4Å: Chain B: Y.105, F.134, H.204, S.230, S.231, S.232 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.105 Water bridges: B:H.204, B:S.230, B:L.233 GOL.7: 6 residues within 4Å: Chain B: E.46, D.47, G.50, V.51, L.52, R.56 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.50, B:R.56, B:R.56 GOL.8: 6 residues within 4Å: Chain B: F.24, E.46, F.54, E.55, R.56, S.57 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:F.54 GOL.10: 6 residues within 4Å: Chain C: V.254, D.255, H.257, I.264, E.265, V.266 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:H.257, C:V.266 GOL.11: 5 residues within 4Å: Chain C: E.46, D.47, G.50, V.51, L.52 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.47 GOL.13: 5 residues within 4Å: Chain D: Y.105, H.204, S.230, S.231, S.232 6 PLIP interactions: 4 interactions with chain D, 2 interactions with chain C Water bridges: D:Y.105, D:Y.105, D:H.204, D:L.233, C:Y.105, C:S.231 GOL.14: 6 residues within 4Å: Chain D: E.46, D.47, G.50, V.51, L.52, R.56 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:E.46, D:D.47, D:R.56 Water bridges: D:L.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jo, I. et al., Structural details of the OxyR peroxide-sensing mechanism. Proc.Natl.Acad.Sci.USA (2015)

Release Date

2015-04-29

Peptides

OxyR: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

OxyR

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