SMTL ID : 4x6g.2 (1 other biounit)

Full-length OxyR C199D from pseudomonas aeruginosa

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x PEO: HYDROGEN PEROXIDE(Non-functional Binders)

PEO.1: 5 residues within 4Å: Chain A: F.134, T.135, G.203, H.204, D.205 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.135, A:T.135, A:G.203, A:H.204, A:D.205 Water bridges: A:Y.105, A:F.206, A:F.206 PEO.3: 5 residues within 4Å: Chain B: F.134, T.135, G.203, H.204, D.205 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:T.135, B:T.135, B:D.205, B:D.205 Water bridges: B:Y.105, B:F.206, B:F.206 PEO.5: 6 residues within 4Å: Chain C: I.104, F.134, T.135, G.203, H.204, D.205 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:T.135, C:T.135, C:D.205, C:D.205 Water bridges: C:Y.105, C:H.204, C:F.206 PEO.7: 5 residues within 4Å: Chain D: I.104, F.134, T.135, G.203, D.205 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:T.135, D:T.135, D:D.205 Water bridges: D:Y.105, D:T.135, D:G.203, D:F.206, D:F.206

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: Y.105, H.204, S.230, S.231, S.232 Ligands: GOL.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.105 Water bridges: A:H.204, A:S.231 GOL.4: 5 residues within 4Å: Chain B: Y.105, H.204, S.231, S.232 Ligands: GOL.2 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.204 GOL.6: 5 residues within 4Å: Chain C: Y.105, H.204, S.230, S.231, S.232 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.230 GOL.8: 6 residues within 4Å: Chain D: E.46, D.47, G.50, V.51, L.52, R.56 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:E.46, D:D.47, D:R.56, D:R.56 GOL.9: 5 residues within 4Å: Chain D: Y.105, H.204, S.230, S.231, S.232 1 PLIP interactions: 1 interactions with chain D Water bridges: D:Y.105

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Jo, I. et al., Structural details of the OxyR peroxide-sensing mechanism. Proc.Natl.Acad.Sci.USA (2015)

Release Date

2015-04-29

Peptides

OxyR: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

OxyR

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