SMTL ID : 4x6p.1 (1 other biounit)

FACTOR XIA (PICHIA PASTORIS; C500S [C122S]) IN COMPLEX WITH THE INHIBITOR (2E)-N-{(1S)-1-[4-(3-amino-1H-indazol-6-yl)-1H-imidazol-2-yl]-2-phenylethyl}-3-[5-chloro-2-(1H-tetrazol-1-yl)phenyl]prop-2-enamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: R.9, L.62, N.63, N.143 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.62 Hydrogen bonds: A:N.63, A:N.143

1 x 3YU: (2E)-N-{(1S)-1-[4-(3-amino-1H-indazol-6-yl)-1H-imidazol-2-yl]-2-phenylethyl}-3-[5-chloro-2-(1H-tetrazol-1-yl)phenyl]prop-2-enamide(Non-covalent)

3YU.2: 26 residues within 4Å: Chain A: R.26, H.27, L.28, C.29, H.44, C.45, Y.134, L.137, I.141, D.182, A.183, C.184, K.185, G.186, D.187, S.188, T.206, S.207, W.208, G.209, E.210, G.211, C.212, G.219, V.220, Y.221 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:I.141, A:T.206 Hydrogen bonds: A:H.27, A:Y.134, A:G.186, A:D.187, A:S.188, A:S.188 Water bridges: A:R.26, A:R.26, A:H.27, A:I.141, A:I.141, A:S.207, A:G.209, A:G.211

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.3: 5 residues within 4Å: Chain A: V.122, I.123, Y.124, T.125, H.196 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.125, A:T.125 Water bridges: A:I.123, A:I.123, A:D.126, A:N.197 Salt bridges: A:H.196, A:H.196

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 11 residues within 4Å: Chain A: V.8, R.9, G.10, E.11, W.12, P.13, Q.15, I.61, L.62, W.132, L.145 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.10, A:W.12, A:W.12, A:Q.15, A:I.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pinto, D.J. et al., Structure-based design of inhibitors of coagulation factor XIa with novel P1 moieties. Bioorg.Med.Chem.Lett. (2015)

Release Date

2015-02-18

Peptides

Coagulation factor XI, light chain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Coagulation factor XI, light chain

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