- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.62 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x 2CV: HEGA-10(Non-covalent)
- 4 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.2: 8 residues within 4Å:- Chain A: L.27, Y.28, H.67, P.68, N.69, A.70, V.72, F.73
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.28, A:H.67, A:N.69
- Water bridges: A:N.69
1PE.7: 6 residues within 4Å:- Chain B: L.27, Y.28, H.67, N.69, A.70, F.73
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Y.28, B:N.69
1PE.10: 8 residues within 4Å:- Chain C: L.27, Y.28, H.67, P.68, N.69, A.70, V.72, F.73
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:H.67, C:N.69
- Water bridges: C:N.69
1PE.15: 6 residues within 4Å:- Chain D: L.27, Y.28, H.67, N.69, A.70, F.73
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:N.69
- 6 x NA: SODIUM ION(Non-functional Binders)
NA.3: 3 residues within 4Å:- Ligands: NA.4, NA.11, NA.12
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:S.54
NA.4: 3 residues within 4Å:- Ligands: NA.3, NA.11, NA.12
8 PLIP interactions:2 interactions with chain A, 2 interactions with chain B, 2 interactions with chain D, 2 interactions with chain C- Water bridges: A:L.52, A:L.52, B:L.52, B:L.52, D:L.52, D:L.52, C:L.52, C:L.52
NA.8: 1 residues within 4Å:- Ligands: NA.16
6 PLIP interactions:2 interactions with chain D, 1 interactions with chain A, 1 interactions with chain B, 2 interactions with chain C- Water bridges: D:T.51, D:L.52, A:T.51, B:T.51, C:T.51, C:L.52
NA.11: 3 residues within 4Å:- Ligands: NA.3, NA.4, NA.12
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:S.54
NA.12: 3 residues within 4Å:- Ligands: NA.3, NA.4, NA.11
8 PLIP interactions:2 interactions with chain A, 2 interactions with chain B, 2 interactions with chain D, 2 interactions with chain C- Water bridges: A:L.52, A:L.52, B:L.52, B:L.52, D:L.52, D:L.52, C:L.52, C:L.52
NA.16: 1 residues within 4Å:- Ligands: NA.8
5 PLIP interactions:2 interactions with chain C, 1 interactions with chain D, 1 interactions with chain B, 1 interactions with chain A- Water bridges: C:T.51, C:L.52, D:T.51, B:T.51, A:T.51
- 2 x AG: SILVER ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Naylor, C.E. et al., Molecular basis of ion permeability in a voltage-gated sodium channel. Embo J. (2016)
- Release Date
- 2016-03-09
- Peptides
- Ion transport protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
CD
D - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.62 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x 2CV: HEGA-10(Non-covalent)
- 4 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 6 x NA: SODIUM ION(Non-functional Binders)
- 2 x AG: SILVER ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Naylor, C.E. et al., Molecular basis of ion permeability in a voltage-gated sodium channel. Embo J. (2016)
- Release Date
- 2016-03-09
- Peptides
- Ion transport protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
CD
D - Membrane
-
We predict this structure to be a membrane protein.