SMTL ID : 4x8q.1

X-ray crystal structure of AlkD2 from Streptococcus mutans

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: H.21, G.22, R.89 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.22 Water bridges: A:R.89, A:R.89 Salt bridges: A:H.21, A:R.89

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: K.72, L.75, I.76, R.79, I.113, E.116, W.117 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.79, A:W.117

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 0 residues within 4Å: (No contacts) 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.96, A:K.96

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: R.134, I.135, N.138, R.139 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mullins, E.A. et al., A New Family of HEAT-Like Repeat Proteins Lacking a Critical Substrate Recognition Motif Present in Related DNA Glycosylases. Plos One (2015)

Release Date

2015-05-27

Peptides

Uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uncharacterized protein