SMTL ID : 4x95.1 (1 other biounit)

Crystal structure of fully glycosylated Lysosomal Phospholipase A2 in complex with methyl arachidonyl fluorophosphonate (MAFP)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.08 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 4 residues within 4Å: Chain A: N.67, T.69, S.70, Q.74 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: N.241, R.261 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.241 NAG.3: 3 residues within 4Å: Chain A: T.253, I.256, N.257 No protein-ligand interaction detected (PLIP) NAG.4: 5 residues within 4Å: Chain A: P.356, G.357, E.362, N.366, T.368 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.362, A:N.366, A:T.368

1 x MAY: METHYL ARACHIDONYL FLUOROPHOSPHONATE(Covalent)

MAY.5: 6 residues within 4Å: Chain A: G.13, D.14, S.166, M.167, K.203, H.360 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.14, A:M.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Glukhova, A. et al., Structure and function of lysosomal phospholipase A2 and lecithin:cholesterol acyltransferase. Nat Commun (2015)

Release Date

2015-03-25

Peptides

Group XV phospholipase A2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Group XV phospholipase A2

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