SMTL ID : 4xak.1 (1 other biounit)

Crystal structure of potent neutralizing antibody m336 in complex with MERS Co-V RBD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 6 residues within 4Å: Chain A: N.44, T.46, K.47, K.221, L.222, E.223 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:K.221, A:E.223 Hydrogen bonds: A:N.44, A:T.46, A:K.221, A:E.223, A:E.223 NAG.2: 2 residues within 4Å: Chain A: S.53, N.121 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.53, A:N.121

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 11 residues within 4Å: Chain B: F.178, P.179, V.181, S.189, L.190, S.191 Chain C: Q.160, S.162, S.176, S.177, T.178 6 PLIP interactions: 3 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:Q.160, C:S.162, C:T.178, B:P.179, B:S.189, B:S.191 GOL.4: 6 residues within 4Å: Chain C: Q.37, K.45, P.59, F.62, E.81, D.82 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Q.37, C:K.45, C:E.81, C:D.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ying, T. et al., Junctional and allele-specific residues are critical for MERS-CoV neutralization by an exceptionally potent germline-like antibody. Nat Commun (2015)

Release Date

2015-08-26

Peptides

Spike glycoprotein: A
Heavy chain of neutralizing antibody m336: B
Light chain of neutralizing antibody m336: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Spike glycoprotein

Heavy chain of neutralizing antibody m336

Light chain of neutralizing antibody m336

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