SMTL ID : 4xax.1

Crystal structure of Thermus thermophilus CarD in complex with the Thermus aquaticus RNA polymerase beta1 domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain B: R.58, K.59, A.60, E.65, P.100, Y.101 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.59, B:E.65, B:Y.101 Water bridges: B:A.62 EDO.2: 2 residues within 4Å: Chain B: N.99, Y.101 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.99 EDO.3: 7 residues within 4Å: Chain B: V.9, R.58, G.98, L.133, E.137 Ligands: EDO.4, EDO.5 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.58, B:E.137, B:E.137 EDO.4: 6 residues within 4Å: Chain B: P.11, P.12, G.14, L.95, A.96 Ligands: EDO.3 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.14 Water bridges: B:L.95, B:R.129, B:R.129 EDO.5: 6 residues within 4Å: Chain B: Y.13, G.14, V.15, L.133, E.136 Ligands: EDO.3 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:V.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bae, B. et al., CarD uses a minor groove wedge mechanism to stabilize the RNA polymerase open promoter complex. Elife (2015)

Release Date

2015-09-16

Peptides

DNA-directed RNA polymerase subunit beta domain 1: A
CarD: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA-directed RNA polymerase subunit beta domain 1

CarD