SMTL ID : 4xc7.1

Isobutyryl-CoA mutase fused with bound butyryl-CoA and without cobalamin or GDP (apo-IcmF)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.45 Å

Oligo State

homo-dimer

Ligands

2 x BCO: Butyryl Coenzyme A(Non-covalent)

BCO.1: 24 residues within 4Å: Chain A: F.605, F.607, K.608, R.609, R.616, F.618, R.642, S.644, S.695, S.697, T.699, R.748, T.750, Q.752, Y.792, Y.799, S.841, F.843, R.876, K.881, Y.882, H.883, Q.885, S.917 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:Y.799, A:K.881, A:H.883 Hydrogen bonds: A:F.607, A:R.609, A:R.616, A:S.644, A:S.695, A:S.697, A:Q.752, A:Y.792, A:S.841, A:S.841 Salt bridges: A:R.609, A:R.642, A:R.748, A:R.748, A:R.876, A:K.881, A:K.881 pi-Stacking: A:F.605, A:F.605 BCO.3: 5 residues within 4Å: Chain B: F.605, F.607, R.609, R.748, R.876 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:F.607, B:R.609 Salt bridges: B:R.876 pi-Stacking: B:F.605, B:F.605

2 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.2: 6 residues within 4Å: Chain A: G.239, G.241, S.243, S.244, R.285, K.378 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.239, A:G.241, A:S.243 Salt bridges: A:R.285, A:R.285, A:K.378 TLA.4: 8 residues within 4Å: Chain B: G.239, A.240, G.241, K.242, S.243, S.244, R.285, K.378 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:G.241, B:S.243, B:S.244, B:S.244, B:S.244, B:R.285, B:R.285 Salt bridges: B:R.285, B:K.378

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jost, M. et al., Visualization of a radical B12 enzyme with its G-protein chaperone. Proc.Natl.Acad.Sci.USA (2015)

Release Date

2015-02-11

Peptides

Isobutyryl-CoA mutase fused: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Isobutyryl-CoA mutase fused

Related Entries With Identical Sequence