- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NI: NICKEL (II) ION(Non-covalent)
- 4 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)
AKG.2: 13 residues within 4Å:- Chain A: Y.89, L.91, L.99, H.102, K.137, L.139, Y.141, F.153, H.206, T.208, R.217, L.219
- Ligands: NI.1
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:L.99, A:L.139, A:F.153
- Hydrogen bonds: A:Y.141
- Water bridges: A:R.93, A:K.137
- Salt bridges: A:H.102, A:K.137, A:R.217
AKG.5: 13 residues within 4Å:- Chain B: Y.89, L.91, L.99, H.102, K.137, L.139, Y.141, F.153, H.206, T.208, R.217, L.219
- Ligands: NI.4
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:L.99, B:L.139
- Hydrogen bonds: B:Y.89, B:Y.141
- Water bridges: B:R.51, B:R.51, B:K.137, B:K.137
- Salt bridges: B:H.102, B:K.137, B:R.217
AKG.8: 12 residues within 4Å:- Chain C: Y.89, L.91, L.99, H.102, K.137, Y.141, F.153, H.206, T.208, R.217, L.219
- Ligands: NI.7
11 PLIP interactions:11 interactions with chain C- Hydrophobic interactions: C:L.91, C:L.99, C:F.153, C:T.208
- Water bridges: C:R.93, C:K.137, C:K.137, C:E.202, C:E.202
- Salt bridges: C:K.137, C:R.217
AKG.11: 12 residues within 4Å:- Chain D: Y.89, L.91, L.99, H.102, K.137, Y.141, F.153, H.206, T.208, R.217, L.219
- Ligands: NI.10
9 PLIP interactions:9 interactions with chain D- Hydrophobic interactions: D:L.99, D:F.153
- Hydrogen bonds: D:Y.89, D:Y.141
- Water bridges: D:R.93, D:K.137
- Salt bridges: D:H.102, D:K.137, D:R.217
- 1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 3 x CS: CESIUM ION(Non-covalent)
CS.6: 2 residues within 4Å:- Chain B: D.249, D.255
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:D.249
CS.9: 2 residues within 4Å:- Chain C: D.249, D.255
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:D.249
CS.12: 2 residues within 4Å:- Chain D: D.249, D.255
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:D.249
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McCulloch, K.M. et al., Oxidative cyclizations in orthosomycin biosynthesis expand the known chemistry of an oxygenase superfamily. Proc.Natl.Acad.Sci.USA (2015)
- Release Date
- 2015-08-05
- Peptides
- oxidase/hydroxylase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NI: NICKEL (II) ION(Non-covalent)
- 4 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)
- 1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 3 x CS: CESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McCulloch, K.M. et al., Oxidative cyclizations in orthosomycin biosynthesis expand the known chemistry of an oxygenase superfamily. Proc.Natl.Acad.Sci.USA (2015)
- Release Date
- 2015-08-05
- Peptides
- oxidase/hydroxylase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D