SMTL ID : 4xcg.1 (1 other biounit)

Crystal structure of a hexadecameric TF55 complex from S. solfataricus, crystal form I

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.74 Å

Oligo State

hetero-8-8-mer

Ligands

8 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 23 residues within 4Å: Chain A: T.51, Y.52, G.53, P.54, D.104, G.105, K.107, T.108, T.169, S.170, K.174, G.419, G.420, G.421, E.424, L.460, L.489, N.490, L.491, M.499, V.504, E.506, K.511 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.53, A:D.104, A:D.104, A:G.420, A:G.421, A:E.424, A:E.506, A:E.506, A:K.511 Salt bridges: A:K.107, A:K.174 ADP.2: 23 residues within 4Å: Chain C: T.51, Y.52, G.53, P.54, D.104, G.105, K.107, T.108, T.169, S.170, K.174, G.419, G.420, G.421, E.424, L.460, L.489, N.490, L.491, M.499, V.504, E.506, K.511 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:G.53, C:D.104, C:D.104, C:G.420, C:G.421, C:E.424, C:E.506, C:E.506, C:K.511 Salt bridges: C:K.107, C:K.174 ADP.3: 23 residues within 4Å: Chain E: T.51, Y.52, G.53, P.54, D.104, G.105, K.107, T.108, T.169, S.170, K.174, G.419, G.420, G.421, E.424, L.460, L.489, N.490, L.491, M.499, V.504, E.506, K.511 11 PLIP interactions: 11 interactions with chain E Hydrogen bonds: E:G.53, E:D.104, E:D.104, E:G.420, E:G.421, E:E.424, E:E.506, E:E.506, E:K.511 Salt bridges: E:K.107, E:K.174 ADP.4: 23 residues within 4Å: Chain G: T.51, Y.52, G.53, P.54, D.104, G.105, K.107, T.108, T.169, S.170, K.174, G.419, G.420, G.421, E.424, L.460, L.489, N.490, L.491, M.499, V.504, E.506, K.511 11 PLIP interactions: 11 interactions with chain G Hydrogen bonds: G:G.53, G:D.104, G:D.104, G:G.420, G:G.421, G:E.424, G:E.506, G:E.506, G:K.511 Salt bridges: G:K.107, G:K.174 ADP.5: 23 residues within 4Å: Chain I: T.51, Y.52, G.53, P.54, D.104, G.105, K.107, T.108, T.169, S.170, K.174, G.419, G.420, G.421, E.424, L.460, L.489, N.490, L.491, M.499, V.504, E.506, K.511 10 PLIP interactions: 10 interactions with chain I Hydrogen bonds: I:G.53, I:D.104, I:D.104, I:G.420, I:G.421, I:E.424, I:E.506, I:K.511 Salt bridges: I:K.107, I:K.174 ADP.6: 23 residues within 4Å: Chain K: T.51, Y.52, G.53, P.54, D.104, G.105, K.107, T.108, T.169, S.170, K.174, G.419, G.420, G.421, E.424, L.460, L.489, N.490, L.491, M.499, V.504, E.506, K.511 10 PLIP interactions: 10 interactions with chain K Hydrogen bonds: K:G.53, K:D.104, K:D.104, K:G.420, K:G.421, K:E.424, K:E.506, K:K.511 Salt bridges: K:K.107, K:K.174 ADP.7: 23 residues within 4Å: Chain M: T.51, Y.52, G.53, P.54, D.104, G.105, K.107, T.108, T.169, S.170, K.174, G.419, G.420, G.421, E.424, L.460, L.489, N.490, L.491, M.499, V.504, E.506, K.511 10 PLIP interactions: 10 interactions with chain M Hydrogen bonds: M:G.53, M:D.104, M:D.104, M:G.420, M:G.421, M:E.424, M:E.506, M:K.511 Salt bridges: M:K.107, M:K.174 ADP.8: 23 residues within 4Å: Chain O: T.51, Y.52, G.53, P.54, D.104, G.105, K.107, T.108, T.169, S.170, K.174, G.419, G.420, G.421, E.424, L.460, L.489, N.490, L.491, M.499, V.504, E.506, K.511 10 PLIP interactions: 10 interactions with chain O Hydrogen bonds: O:G.53, O:D.104, O:D.104, O:G.420, O:G.421, O:E.424, O:E.506, O:K.511 Salt bridges: O:K.107, O:K.174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaston, J.J. et al., Structural and Functional Insights into the Evolution and Stress Adaptation of Type II Chaperonins. Structure (2016)

Release Date

2016-02-10

Peptides

Thermosome subunit beta: ACEGIKMO
Thermosome subunit alpha: BDFHJLNP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
B

E
B

G
B

I
B

K
B

M
B

O
B

B
A

D
A

F
A

H
A

J
A

L
A

N
A

P
A

Thermosome subunit beta

Thermosome subunit alpha

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