SMTL ID : 4xe5.1

Crystal structure of the Na,K-ATPase from bovine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.90 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.374, T.376, D.715, D.719 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.376, A:D.715, H2O.1, H2O.1 MG.2: 3 residues within 4Å: Chain A: G.277, K.724, D.745 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.745, A:D.745 MG.3: 4 residues within 4Å: Chain A: S.780, N.781, E.784, D.809 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.784, A:D.809, H2O.1, H2O.1, H2O.1

1 x OBN: OUABAIN(Non-covalent)

OBN.4: 18 residues within 4Å: Chain A: Q.116, E.121, E.122, P.123, D.126, L.130, E.317, I.320, G.324, V.327, A.328, E.332, F.788, F.791, T.802, I.805, R.885, D.889 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.320, A:V.327, A:A.328, A:F.788, A:F.788, A:F.791 Hydrogen bonds: A:Q.116, A:E.121, A:E.122, A:E.317, A:E.317, A:T.802

2 x CLR: CHOLESTEROL(Non-covalent)

CLR.5: 10 residues within 4Å: Chain A: E.873, T.984, F.987, C.988, P.991, L.994 Chain B: T.53, V.56, M.57, T.60 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:V.56, B:V.56, B:M.57, B:T.60, A:P.991, A:L.994 Hydrogen bonds: A:T.984 CLR.6: 10 residues within 4Å: Chain A: W.929, T.960, Y.968, P.983, W.986, F.987, F.990 Chain C: V.18, G.22, F.25 10 PLIP interactions: 3 interactions with chain C, 7 interactions with chain A Hydrophobic interactions: C:F.25, C:F.25, C:F.25, A:W.929, A:T.960, A:P.983, A:W.986, A:W.986, A:F.987, A:F.990

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gregersen, J.L. et al., Isolation, crystallization and crystal structure determination of bovine kidney Na(+),K(+)-ATPase. Acta Crystallogr.,Sect.F (2016)

Release Date

2016-03-09

Peptides

Sodium/potassium-transporting ATPase subunit alpha-1: A
Sodium/potassium-transporting ATPase subunit beta: B
Sodium/potassium-transporting ATPase subunit gamma: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Sodium/potassium-transporting ATPase subunit alpha-1

Sodium/potassium-transporting ATPase subunit beta

Sodium/potassium-transporting ATPase subunit gamma