SMTL ID : 4xgs.1

Crystal structure analysis of novel iron uptake mechanism of Gram-negative bacterial ferritin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-24-mer

Ligands

24 x OFO: HYDROXY DIIRON-OXO MOIETY(Non-covalent)(Covalent)

OFO.1: 9 residues within 4Å: Chain A: E.17, H.46, E.50, H.53, E.94, I.97, Y.123, Q.127, E.130 9 PLIP interactions: 9 interactions with chain A, Hydrogen bonds: A:Q.127, A:Q.127 Metal complexes: A:E.17, A:E.50, A:E.50, A:H.53, A:E.94, A:E.94, A:E.130 OFO.7: 9 residues within 4Å: Chain B: E.17, H.46, E.50, H.53, E.94, I.97, Y.123, Q.127, E.130 9 PLIP interactions: 9 interactions with chain B, Hydrogen bonds: B:E.17, B:Q.127 Metal complexes: B:E.17, B:E.50, B:E.50, B:H.53, B:E.94, B:E.94, B:E.130 OFO.10: 9 residues within 4Å: Chain C: E.17, H.46, E.50, H.53, E.94, I.97, Y.123, Q.127, E.130 9 PLIP interactions: 9 interactions with chain C, Hydrogen bonds: C:E.17, C:Q.127 Metal complexes: C:E.17, C:E.50, C:E.50, C:H.53, C:E.94, C:E.94, C:E.130 OFO.16: 9 residues within 4Å: Chain D: E.17, H.46, E.50, H.53, E.94, I.97, Y.123, Q.127, E.130 9 PLIP interactions: 9 interactions with chain D, Hydrogen bonds: D:Q.127, D:Q.127 Metal complexes: D:E.17, D:E.50, D:E.50, D:H.53, D:E.94, D:E.94, D:E.130 OFO.22: 9 residues within 4Å: Chain E: E.17, H.46, E.50, H.53, E.94, I.97, Y.123, Q.127, E.130 9 PLIP interactions: 9 interactions with chain E, Hydrogen bonds: E:E.17, E:Q.127 Metal complexes: E:E.17, E:E.50, E:E.50, E:H.53, E:E.94, E:E.94, E:E.130 OFO.27: 9 residues within 4Å: Chain F: E.17, H.46, E.50, H.53, E.94, I.97, Y.123, Q.127, E.130 8 PLIP interactions: 8 interactions with chain F, Hydrogen bonds: F:Q.127 Metal complexes: F:E.17, F:E.50, F:E.50, F:H.53, F:E.94, F:E.94, F:E.130 OFO.33: 9 residues within 4Å: Chain G: E.17, H.46, E.50, H.53, E.94, I.97, Y.123, Q.127, E.130 9 PLIP interactions: 9 interactions with chain G, Hydrogen bonds: G:Q.127, G:Q.127 Metal complexes: G:E.17, G:E.50, G:E.50, G:H.53, G:E.94, G:E.94, G:E.130 OFO.39: 9 residues within 4Å: Chain H: E.17, H.46, E.50, H.53, E.94, I.97, Y.123, Q.127, E.130 9 PLIP interactions: 9 interactions with chain H, Hydrogen bonds: H:E.17, H:Q.127 Metal complexes: H:E.17, H:E.50, H:E.50, H:H.53, H:E.94, H:E.94, H:E.130 OFO.42: 9 residues within 4Å: Chain I: E.17, H.46, E.50, H.53, E.94, I.97, Y.123, Q.127, E.130 9 PLIP interactions: 9 interactions with chain I, Hydrogen bonds: I:E.17, I:Q.127 Metal complexes: I:E.17, I:E.50, I:E.50, I:H.53, I:E.94, I:E.94, I:E.130 OFO.48: 9 residues within 4Å: Chain J: E.17, H.46, E.50, H.53, E.94, I.97, Y.123, Q.127, E.130 9 PLIP interactions: 9 interactions with chain J, Hydrogen bonds: J:Q.127, J:Q.127 Metal complexes: J:E.17, J:E.50, J:E.50, J:H.53, J:E.94, J:E.94, J:E.130 OFO.54: 9 residues within 4Å: Chain K: E.17, H.46, E.50, H.53, E.94, I.97, Y.123, Q.127, E.130 9 PLIP interactions: 9 interactions with chain K, Hydrogen bonds: K:E.17, K:Q.127 Metal complexes: K:E.17, K:E.50, K:E.50, K:H.53, K:E.94, K:E.94, K:E.130 OFO.59: 9 residues within 4Å: Chain L: E.17, H.46, E.50, H.53, E.94, I.97, Y.123, Q.127, E.130 8 PLIP interactions: 8 interactions with chain L, Hydrogen bonds: L:Q.127 Metal complexes: L:E.17, L:E.50, L:E.50, L:H.53, L:E.94, L:E.94, L:E.130 OFO.65: 9 residues within 4Å: Chain M: E.17, H.46, E.50, H.53, E.94, I.97, Y.123, Q.127, E.130 9 PLIP interactions: 9 interactions with chain M, Hydrogen bonds: M:Q.127, M:Q.127 Metal complexes: M:E.17, M:E.50, M:E.50, M:H.53, M:E.94, M:E.94, M:E.130 OFO.71: 9 residues within 4Å: Chain N: E.17, H.46, E.50, H.53, E.94, I.97, Y.123, Q.127, E.130 9 PLIP interactions: 9 interactions with chain N, Hydrogen bonds: N:E.17, N:Q.127 Metal complexes: N:E.17, N:E.50, N:E.50, N:H.53, N:E.94, N:E.94, N:E.130 OFO.74: 9 residues within 4Å: Chain O: E.17, H.46, E.50, H.53, E.94, I.97, Y.123, Q.127, E.130 9 PLIP interactions: 9 interactions with chain O, Hydrogen bonds: O:E.17, O:Q.127 Metal complexes: O:E.17, O:E.50, O:E.50, O:H.53, O:E.94, O:E.94, O:E.130 OFO.80: 9 residues within 4Å: Chain P: E.17, H.46, E.50, H.53, E.94, I.97, Y.123, Q.127, E.130 9 PLIP interactions: 9 interactions with chain P, Hydrogen bonds: P:Q.127, P:Q.127 Metal complexes: P:E.17, P:E.50, P:E.50, P:H.53, P:E.94, P:E.94, P:E.130 OFO.86: 9 residues within 4Å: Chain Q: E.17, H.46, E.50, H.53, E.94, I.97, Y.123, Q.127, E.130 9 PLIP interactions: 9 interactions with chain Q, Hydrogen bonds: Q:E.17, Q:Q.127 Metal complexes: Q:E.17, Q:E.50, Q:E.50, Q:H.53, Q:E.94, Q:E.94, Q:E.130 OFO.91: 9 residues within 4Å: Chain R: E.17, H.46, E.50, H.53, E.94, I.97, Y.123, Q.127, E.130 8 PLIP interactions: 8 interactions with chain R, Hydrogen bonds: R:Q.127 Metal complexes: R:E.17, R:E.50, R:E.50, R:H.53, R:E.94, R:E.94, R:E.130 OFO.97: 9 residues within 4Å: Chain S: E.17, H.46, E.50, H.53, E.94, I.97, Y.123, Q.127, E.130 9 PLIP interactions: 9 interactions with chain S, Hydrogen bonds: S:Q.127, S:Q.127 Metal complexes: S:E.17, S:E.50, S:E.50, S:H.53, S:E.94, S:E.94, S:E.130 OFO.103: 9 residues within 4Å: Chain T: E.17, H.46, E.50, H.53, E.94, I.97, Y.123, Q.127, E.130 9 PLIP interactions: 9 interactions with chain T, Hydrogen bonds: T:E.17, T:Q.127 Metal complexes: T:E.17, T:E.50, T:E.50, T:H.53, T:E.94, T:E.94, T:E.130 OFO.106: 9 residues within 4Å: Chain U: E.17, H.46, E.50, H.53, E.94, I.97, Y.123, Q.127, E.130 9 PLIP interactions: 9 interactions with chain U, Hydrogen bonds: U:E.17, U:Q.127 Metal complexes: U:E.17, U:E.50, U:E.50, U:H.53, U:E.94, U:E.94, U:E.130 OFO.112: 9 residues within 4Å: Chain V: E.17, H.46, E.50, H.53, E.94, I.97, Y.123, Q.127, E.130 9 PLIP interactions: 9 interactions with chain V, Hydrogen bonds: V:Q.127, V:Q.127 Metal complexes: V:E.17, V:E.50, V:E.50, V:H.53, V:E.94, V:E.94, V:E.130 OFO.118: 9 residues within 4Å: Chain W: E.17, H.46, E.50, H.53, E.94, I.97, Y.123, Q.127, E.130 9 PLIP interactions: 9 interactions with chain W, Hydrogen bonds: W:E.17, W:Q.127 Metal complexes: W:E.17, W:E.50, W:E.50, W:H.53, W:E.94, W:E.94, W:E.130 OFO.123: 9 residues within 4Å: Chain X: E.17, H.46, E.50, H.53, E.94, I.97, Y.123, Q.127, E.130 8 PLIP interactions: 8 interactions with chain X, Hydrogen bonds: X:Q.127 Metal complexes: X:E.17, X:E.50, X:E.50, X:H.53, X:E.94, X:E.94, X:E.130

16 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.69, N.71, T.72 Chain F: S.75 Ligand excluded by PLIP SO4.11: 4 residues within 4Å: Chain C: R.69, N.71, T.72 Chain D: S.75 Ligand excluded by PLIP SO4.17: 6 residues within 4Å: Chain D: H.46, E.49, E.126, E.129, E.130, D.162 Ligand excluded by PLIP SO4.23: 4 residues within 4Å: Chain B: S.75 Chain E: R.69, N.71, T.72 Ligand excluded by PLIP SO4.34: 4 residues within 4Å: Chain G: R.69, N.71, T.72 Chain L: S.75 Ligand excluded by PLIP SO4.43: 4 residues within 4Å: Chain I: R.69, N.71, T.72 Chain J: S.75 Ligand excluded by PLIP SO4.49: 6 residues within 4Å: Chain J: H.46, E.49, E.126, E.129, E.130, D.162 Ligand excluded by PLIP SO4.55: 4 residues within 4Å: Chain H: S.75 Chain K: R.69, N.71, T.72 Ligand excluded by PLIP SO4.66: 4 residues within 4Å: Chain M: R.69, N.71, T.72 Chain R: S.75 Ligand excluded by PLIP SO4.75: 4 residues within 4Å: Chain O: R.69, N.71, T.72 Chain P: S.75 Ligand excluded by PLIP SO4.81: 6 residues within 4Å: Chain P: H.46, E.49, E.126, E.129, E.130, D.162 Ligand excluded by PLIP SO4.87: 4 residues within 4Å: Chain N: S.75 Chain Q: R.69, N.71, T.72 Ligand excluded by PLIP SO4.98: 4 residues within 4Å: Chain S: R.69, N.71, T.72 Chain X: S.75 Ligand excluded by PLIP SO4.107: 4 residues within 4Å: Chain U: R.69, N.71, T.72 Chain V: S.75 Ligand excluded by PLIP SO4.113: 6 residues within 4Å: Chain V: H.46, E.49, E.126, E.129, E.130, D.162 Ligand excluded by PLIP SO4.119: 4 residues within 4Å: Chain T: S.75 Chain W: R.69, N.71, T.72 Ligand excluded by PLIP

88 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: S.21, L.22, Q.25, A.47, Q.48, M.51 Chain F: M.51, M.54 Ligand excluded by PLIP GOL.4: 9 residues within 4Å: Chain A: R.56, D.59, Y.60, D.63, F.119 Chain X: H.128, E.129, K.132 Ligands: GOL.6 Ligand excluded by PLIP GOL.5: 6 residues within 4Å: Chain A: F.36, S.82, L.83, D.84, G.145, L.151 Ligand excluded by PLIP GOL.6: 8 residues within 4Å: Chain A: R.56, Y.60, P.115, N.118, F.119 Chain X: S.125, H.128 Ligands: GOL.4 Ligand excluded by PLIP GOL.8: 8 residues within 4Å: Chain B: S.21, L.22, Q.25, A.47, Q.48, M.51 Chain E: M.51, Q.55 Ligand excluded by PLIP GOL.9: 8 residues within 4Å: Chain B: Y.60, P.115, N.118, F.119 Chain Q: S.125, H.128, E.129 Ligands: GOL.90 Ligand excluded by PLIP GOL.12: 9 residues within 4Å: Chain C: S.21, L.22, Q.25, A.47, Q.48, M.51 Chain D: M.51, M.54, Q.55 Ligand excluded by PLIP GOL.13: 6 residues within 4Å: Chain C: N.15, Y.19, N.71, T.72, V.73, E.74 Ligand excluded by PLIP GOL.14: 9 residues within 4Å: Chain A: H.128, E.129, K.132 Chain C: R.56, D.59, Y.60, D.63, F.119 Ligands: GOL.15 Ligand excluded by PLIP GOL.15: 8 residues within 4Å: Chain A: V.124, S.125, H.128 Chain C: Y.60, P.115, N.118, F.119 Ligands: GOL.14 Ligand excluded by PLIP GOL.18: 9 residues within 4Å: Chain C: M.51, M.54, Q.55 Chain D: S.21, L.22, Q.25, A.47, Q.48, M.51 Ligand excluded by PLIP GOL.19: 6 residues within 4Å: Chain A: S.136, D.139, K.140 Chain D: T.35, E.37, D.155 Ligand excluded by PLIP GOL.20: 9 residues within 4Å: Chain D: R.56, D.59, Y.60, D.63, F.119 Chain T: H.128, E.129, K.132 Ligands: GOL.21 Ligand excluded by PLIP GOL.21: 6 residues within 4Å: Chain D: Y.60, P.115, N.118 Chain T: S.125, H.128 Ligands: GOL.20 Ligand excluded by PLIP GOL.24: 9 residues within 4Å: Chain B: M.51, M.54, Q.55 Chain E: S.21, L.22, Q.25, A.47, Q.48, M.51 Ligand excluded by PLIP GOL.25: 6 residues within 4Å: Chain D: T.98, N.102 Chain E: H.1, L.2, D.113, P.115 Ligand excluded by PLIP GOL.26: 5 residues within 4Å: Chain E: H.128 Chain T: R.56, Y.60, F.119 Ligands: GOL.105 Ligand excluded by PLIP GOL.28: 9 residues within 4Å: Chain A: M.51, M.54, Q.55 Chain F: S.21, L.22, Q.25, A.47, Q.48, M.51 Ligand excluded by PLIP GOL.29: 7 residues within 4Å: Chain F: H.1, L.2, K.3, N.111, Q.112, D.113, P.115 Ligand excluded by PLIP GOL.30: 6 residues within 4Å: Chain F: Y.60, P.115, N.118, F.119 Chain O: H.128 Ligands: GOL.31 Ligand excluded by PLIP GOL.31: 6 residues within 4Å: Chain F: N.118, F.119, Q.121, W.122 Chain O: S.125 Ligands: GOL.30 Ligand excluded by PLIP GOL.32: 7 residues within 4Å: Chain F: T.98, H.128, E.131 Chain M: H.1, L.2, T.64, P.115 Ligand excluded by PLIP GOL.35: 8 residues within 4Å: Chain G: S.21, L.22, Q.25, A.47, Q.48, M.51 Chain L: M.51, M.54 Ligand excluded by PLIP GOL.36: 9 residues within 4Å: Chain G: R.56, D.59, Y.60, D.63, F.119 Chain R: H.128, E.129, K.132 Ligands: GOL.38 Ligand excluded by PLIP GOL.37: 6 residues within 4Å: Chain G: F.36, S.82, L.83, D.84, G.145, L.151 Ligand excluded by PLIP GOL.38: 8 residues within 4Å: Chain G: R.56, Y.60, P.115, N.118, F.119 Chain R: S.125, H.128 Ligands: GOL.36 Ligand excluded by PLIP GOL.40: 8 residues within 4Å: Chain H: S.21, L.22, Q.25, A.47, Q.48, M.51 Chain K: M.51, Q.55 Ligand excluded by PLIP GOL.41: 8 residues within 4Å: Chain H: Y.60, P.115, N.118, F.119 Chain W: S.125, H.128, E.129 Ligands: GOL.122 Ligand excluded by PLIP GOL.44: 9 residues within 4Å: Chain I: S.21, L.22, Q.25, A.47, Q.48, M.51 Chain J: M.51, M.54, Q.55 Ligand excluded by PLIP GOL.45: 6 residues within 4Å: Chain I: N.15, Y.19, N.71, T.72, V.73, E.74 Ligand excluded by PLIP GOL.46: 9 residues within 4Å: Chain G: H.128, E.129, K.132 Chain I: R.56, D.59, Y.60, D.63, F.119 Ligands: GOL.47 Ligand excluded by PLIP GOL.47: 8 residues within 4Å: Chain G: V.124, S.125, H.128 Chain I: Y.60, P.115, N.118, F.119 Ligands: GOL.46 Ligand excluded by PLIP GOL.50: 9 residues within 4Å: Chain I: M.51, M.54, Q.55 Chain J: S.21, L.22, Q.25, A.47, Q.48, M.51 Ligand excluded by PLIP GOL.51: 6 residues within 4Å: Chain G: S.136, D.139, K.140 Chain J: T.35, E.37, D.155 Ligand excluded by PLIP GOL.52: 9 residues within 4Å: Chain J: R.56, D.59, Y.60, D.63, F.119 Chain N: H.128, E.129, K.132 Ligands: GOL.53 Ligand excluded by PLIP GOL.53: 6 residues within 4Å: Chain J: Y.60, P.115, N.118 Chain N: S.125, H.128 Ligands: GOL.52 Ligand excluded by PLIP GOL.56: 9 residues within 4Å: Chain H: M.51, M.54, Q.55 Chain K: S.21, L.22, Q.25, A.47, Q.48, M.51 Ligand excluded by PLIP GOL.57: 6 residues within 4Å: Chain J: T.98, N.102 Chain K: H.1, L.2, D.113, P.115 Ligand excluded by PLIP GOL.58: 5 residues within 4Å: Chain K: H.128 Chain N: R.56, Y.60, F.119 Ligands: GOL.73 Ligand excluded by PLIP GOL.60: 9 residues within 4Å: Chain G: M.51, M.54, Q.55 Chain L: S.21, L.22, Q.25, A.47, Q.48, M.51 Ligand excluded by PLIP GOL.61: 7 residues within 4Å: Chain L: H.1, L.2, K.3, N.111, Q.112, D.113, P.115 Ligand excluded by PLIP GOL.62: 6 residues within 4Å: Chain L: Y.60, P.115, N.118, F.119 Chain U: H.128 Ligands: GOL.63 Ligand excluded by PLIP GOL.63: 6 residues within 4Å: Chain L: N.118, F.119, Q.121, W.122 Chain U: S.125 Ligands: GOL.62 Ligand excluded by PLIP GOL.64: 7 residues within 4Å: Chain L: T.98, H.128, E.131 Chain S: H.1, L.2, T.64, P.115 Ligand excluded by PLIP GOL.67: 8 residues within 4Å: Chain M: S.21, L.22, Q.25, A.47, Q.48, M.51 Chain R: M.51, M.54 Ligand excluded by PLIP GOL.68: 9 residues within 4Å: Chain F: H.128, E.129, K.132 Chain M: R.56, D.59, Y.60, D.63, F.119 Ligands: GOL.70 Ligand excluded by PLIP GOL.69: 6 residues within 4Å: Chain M: F.36, S.82, L.83, D.84, G.145, L.151 Ligand excluded by PLIP GOL.70: 8 residues within 4Å: Chain F: S.125, H.128 Chain M: R.56, Y.60, P.115, N.118, F.119 Ligands: GOL.68 Ligand excluded by PLIP GOL.72: 8 residues within 4Å: Chain N: S.21, L.22, Q.25, A.47, Q.48, M.51 Chain Q: M.51, Q.55 Ligand excluded by PLIP GOL.73: 8 residues within 4Å: Chain K: S.125, H.128, E.129 Chain N: Y.60, P.115, N.118, F.119 Ligands: GOL.58 Ligand excluded by PLIP GOL.76: 9 residues within 4Å: Chain O: S.21, L.22, Q.25, A.47, Q.48, M.51 Chain P: M.51, M.54, Q.55 Ligand excluded by PLIP GOL.77: 6 residues within 4Å: Chain O: N.15, Y.19, N.71, T.72, V.73, E.74 Ligand excluded by PLIP GOL.78: 9 residues within 4Å: Chain M: H.128, E.129, K.132 Chain O: R.56, D.59, Y.60, D.63, F.119 Ligands: GOL.79 Ligand excluded by PLIP GOL.79: 8 residues within 4Å: Chain M: V.124, S.125, H.128 Chain O: Y.60, P.115, N.118, F.119 Ligands: GOL.78 Ligand excluded by PLIP GOL.82: 9 residues within 4Å: Chain O: M.51, M.54, Q.55 Chain P: S.21, L.22, Q.25, A.47, Q.48, M.51 Ligand excluded by PLIP GOL.83: 6 residues within 4Å: Chain M: S.136, D.139, K.140 Chain P: T.35, E.37, D.155 Ligand excluded by PLIP GOL.84: 9 residues within 4Å: Chain B: H.128, E.129, K.132 Chain P: R.56, D.59, Y.60, D.63, F.119 Ligands: GOL.85 Ligand excluded by PLIP GOL.85: 6 residues within 4Å: Chain B: S.125, H.128 Chain P: Y.60, P.115, N.118 Ligands: GOL.84 Ligand excluded by PLIP GOL.88: 9 residues within 4Å: Chain N: M.51, M.54, Q.55 Chain Q: S.21, L.22, Q.25, A.47, Q.48, M.51 Ligand excluded by PLIP GOL.89: 6 residues within 4Å: Chain P: T.98, N.102 Chain Q: H.1, L.2, D.113, P.115 Ligand excluded by PLIP GOL.90: 5 residues within 4Å: Chain B: R.56, Y.60, F.119 Chain Q: H.128 Ligands: GOL.9 Ligand excluded by PLIP GOL.92: 9 residues within 4Å: Chain M: M.51, M.54, Q.55 Chain R: S.21, L.22, Q.25, A.47, Q.48, M.51 Ligand excluded by PLIP GOL.93: 7 residues within 4Å: Chain R: H.1, L.2, K.3, N.111, Q.112, D.113, P.115 Ligand excluded by PLIP GOL.94: 6 residues within 4Å: Chain I: H.128 Chain R: Y.60, P.115, N.118, F.119 Ligands: GOL.95 Ligand excluded by PLIP GOL.95: 6 residues within 4Å: Chain I: S.125 Chain R: N.118, F.119, Q.121, W.122 Ligands: GOL.94 Ligand excluded by PLIP GOL.96: 7 residues within 4Å: Chain G: H.1, L.2, T.64, P.115 Chain R: T.98, H.128, E.131 Ligand excluded by PLIP GOL.99: 8 residues within 4Å: Chain S: S.21, L.22, Q.25, A.47, Q.48, M.51 Chain X: M.51, M.54 Ligand excluded by PLIP GOL.100: 9 residues within 4Å: Chain L: H.128, E.129, K.132 Chain S: R.56, D.59, Y.60, D.63, F.119 Ligands: GOL.102 Ligand excluded by PLIP GOL.101: 6 residues within 4Å: Chain S: F.36, S.82, L.83, D.84, G.145, L.151 Ligand excluded by PLIP GOL.102: 8 residues within 4Å: Chain L: S.125, H.128 Chain S: R.56, Y.60, P.115, N.118, F.119 Ligands: GOL.100 Ligand excluded by PLIP GOL.104: 8 residues within 4Å: Chain T: S.21, L.22, Q.25, A.47, Q.48, M.51 Chain W: M.51, Q.55 Ligand excluded by PLIP GOL.105: 8 residues within 4Å: Chain E: S.125, H.128, E.129 Chain T: Y.60, P.115, N.118, F.119 Ligands: GOL.26 Ligand excluded by PLIP GOL.108: 9 residues within 4Å: Chain U: S.21, L.22, Q.25, A.47, Q.48, M.51 Chain V: M.51, M.54, Q.55 Ligand excluded by PLIP GOL.109: 6 residues within 4Å: Chain U: N.15, Y.19, N.71, T.72, V.73, E.74 Ligand excluded by PLIP GOL.110: 9 residues within 4Å: Chain S: H.128, E.129, K.132 Chain U: R.56, D.59, Y.60, D.63, F.119 Ligands: GOL.111 Ligand excluded by PLIP GOL.111: 8 residues within 4Å: Chain S: V.124, S.125, H.128 Chain U: Y.60, P.115, N.118, F.119 Ligands: GOL.110 Ligand excluded by PLIP GOL.114: 9 residues within 4Å: Chain U: M.51, M.54, Q.55 Chain V: S.21, L.22, Q.25, A.47, Q.48, M.51 Ligand excluded by PLIP GOL.115: 6 residues within 4Å: Chain S: S.136, D.139, K.140 Chain V: T.35, E.37, D.155 Ligand excluded by PLIP GOL.116: 9 residues within 4Å: Chain H: H.128, E.129, K.132 Chain V: R.56, D.59, Y.60, D.63, F.119 Ligands: GOL.117 Ligand excluded by PLIP GOL.117: 6 residues within 4Å: Chain H: S.125, H.128 Chain V: Y.60, P.115, N.118 Ligands: GOL.116 Ligand excluded by PLIP GOL.120: 9 residues within 4Å: Chain T: M.51, M.54, Q.55 Chain W: S.21, L.22, Q.25, A.47, Q.48, M.51 Ligand excluded by PLIP GOL.121: 6 residues within 4Å: Chain V: T.98, N.102 Chain W: H.1, L.2, D.113, P.115 Ligand excluded by PLIP GOL.122: 5 residues within 4Å: Chain H: R.56, Y.60, F.119 Chain W: H.128 Ligands: GOL.41 Ligand excluded by PLIP GOL.124: 9 residues within 4Å: Chain S: M.51, M.54, Q.55 Chain X: S.21, L.22, Q.25, A.47, Q.48, M.51 Ligand excluded by PLIP GOL.125: 7 residues within 4Å: Chain X: H.1, L.2, K.3, N.111, Q.112, D.113, P.115 Ligand excluded by PLIP GOL.126: 6 residues within 4Å: Chain C: H.128 Chain X: Y.60, P.115, N.118, F.119 Ligands: GOL.127 Ligand excluded by PLIP GOL.127: 6 residues within 4Å: Chain C: S.125 Chain X: N.118, F.119, Q.121, W.122 Ligands: GOL.126 Ligand excluded by PLIP GOL.128: 7 residues within 4Å: Chain A: H.1, L.2, T.64, P.115 Chain X: T.98, H.128, E.131 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, S. et al., Structural Basis of Novel Iron-Uptake Route and Reaction Intermediates in Ferritins from Gram-Negative Bacteria. J. Mol. Biol. (2016)

Release Date

2016-07-06

Peptides

Ferritin: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
A

H
B

I
C

J
D

K
E

L
F

M
A

N
B

O
C

P
D

Q
E

R
F

S
A

T
B

U
C

V
D

W
E

X
F

Ferritin