- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 12 residues within 4Å:- Chain A: S.120, V.122, H.167, L.233, C.234, P.235, A.236, F.244, V.268, S.269, G.270, T.271
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:C.234, A:A.236, A:V.268, A:G.270, A:T.271
GOL.4: 10 residues within 4Å:- Chain A: I.116, E.205, P.206, I.207, S.208, S.209, S.210, F.239
- Chain B: Q.104, F.130
7 PLIP interactions:4 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:I.207, A:S.208, A:S.210, B:Q.104, B:Q.104
- Water bridges: A:S.208, B:Q.104
GOL.7: 4 residues within 4Å:- Chain A: R.169, Q.267, V.268, S.269
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.169, A:Q.267, A:S.269
GOL.18: 12 residues within 4Å:- Chain B: S.120, V.122, H.167, L.233, C.234, P.235, A.236, F.244, V.268, S.269, G.270, T.271
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:C.234, B:A.236, B:V.268, B:G.270
GOL.19: 10 residues within 4Å:- Chain A: Q.104, F.130
- Chain B: I.116, E.205, P.206, I.207, S.208, S.209, S.210, F.239
7 PLIP interactions:4 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:I.207, B:S.208, B:S.210, A:Q.104, A:Q.104
- Water bridges: B:S.208, A:Q.104
GOL.22: 4 residues within 4Å:- Chain B: R.169, Q.267, V.268, S.269
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.169, B:Q.267, B:S.269
- 8 x CL: CHLORIDE ION(Non-functional Binders)
CL.5: 3 residues within 4Å:- Chain A: R.40, R.53, E.74
Ligand excluded by PLIPCL.6: 1 residues within 4Å:- Chain A: R.94
Ligand excluded by PLIPCL.8: 1 residues within 4Å:- Chain A: T.44
Ligand excluded by PLIPCL.15: 2 residues within 4Å:- Chain A: H.228, T.229
Ligand excluded by PLIPCL.20: 3 residues within 4Å:- Chain B: R.40, R.53, E.74
Ligand excluded by PLIPCL.21: 1 residues within 4Å:- Chain B: R.94
Ligand excluded by PLIPCL.23: 1 residues within 4Å:- Chain B: T.44
Ligand excluded by PLIPCL.30: 2 residues within 4Å:- Chain B: H.228, T.229
Ligand excluded by PLIP- 8 x NA: SODIUM ION(Non-functional Binders)
NA.9: 5 residues within 4Å:- Chain A: P.314, Q.317, F.327, A.383, E.384
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:P.314, A:Q.317
NA.10: 5 residues within 4Å:- Chain A: N.12, R.94, L.308, S.378, A.379
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.94, A:L.308
NA.11: 5 residues within 4Å:- Chain A: Q.1, K.2, G.3, F.88, E.384
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.384
NA.12: 2 residues within 4Å:- Chain A: W.246, V.259
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:W.246
- Water bridges: A:L.261
NA.24: 5 residues within 4Å:- Chain B: P.314, Q.317, F.327, A.383, E.384
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.317, B:E.384
NA.25: 5 residues within 4Å:- Chain B: N.12, R.94, L.308, S.378, A.379
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.94, B:L.308
NA.26: 5 residues within 4Å:- Chain B: Q.1, K.2, G.3, F.88, E.384
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.1
NA.27: 2 residues within 4Å:- Chain B: W.246, V.259
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:W.246
- Water bridges: B:L.261
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.13: 1 residues within 4Å:- Chain A: N.147
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.147
- Water bridges: A:N.147
SO4.14: 2 residues within 4Å:- Chain A: Q.181, L.194
2 PLIP interactions:2 interactions with chain A- Water bridges: A:H.141, A:N.147
SO4.28: 1 residues within 4Å:- Chain B: N.147
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.147
- Water bridges: B:N.147
SO4.29: 2 residues within 4Å:- Chain B: Q.181, L.194
1 PLIP interactions:1 interactions with chain B- Water bridges: B:N.147
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Li, S.A. et al., Structural basis of Dscam1 homodimerization: Insights into context constraint for protein recognition. Sci Adv (2016)
- Release Date
- 2016-10-12
- Peptides
- Dscam: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 8 x CL: CHLORIDE ION(Non-functional Binders)
- 8 x NA: SODIUM ION(Non-functional Binders)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Li, S.A. et al., Structural basis of Dscam1 homodimerization: Insights into context constraint for protein recognition. Sci Adv (2016)
- Release Date
- 2016-10-12
- Peptides
- Dscam: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A