SMTL ID : 4xij.1

Crystal Structure of a Shikimate 5-dehydrogenase from Mycobacterium fortuitum Determined by Iodide SAD Phasing

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: R.171, R.172, G.174 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.172 Water bridges: A:Q.176 EDO.2: 4 residues within 4Å: Chain A: A.265, P.266, K.267, E.268 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.267, A:E.268 Water bridges: A:A.265, A:A.265 EDO.3: 2 residues within 4Å: Chain A: G.135, G.136 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.136 Water bridges: A:T.137, A:T.200

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 8 residues within 4Å: Chain A: V.72, T.73, M.74, K.77, N.98, D.114, Q.252 Ligands: SO4.5 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.73, A:N.98, A:D.114 Water bridges: A:T.73, A:T.73 Salt bridges: A:K.77 SO4.5: 5 residues within 4Å: Chain A: H.25, S.26, T.73, M.74 Ligands: SO4.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.73 Water bridges: A:H.25, A:S.26, A:R.27 Salt bridges: A:H.25 SO4.6: 1 residues within 4Å: Chain A: R.171 2 PLIP interactions: 2 interactions with chain A Water bridges: A:S.164 Salt bridges: A:R.171 SO4.7: 2 residues within 4Å: Chain A: K.267, R.271 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.271, A:R.271, A:R.271 Salt bridges: A:K.267, A:R.271

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

SSGCID et al., Crystal Structure of a Shikimate 5-dehydrogenase from Mycobacterium fortuitum Determined by Iodide SAD Phasing. to be published

Release Date

2015-02-11

Peptides

Shikimate 5-dehydrogenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Shikimate 5-dehydrogenase