SMTL ID : 4xik.1

Crystal structure of NanB sialidase from streptococcus pneumoniae in complex with DMSO

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

monomer

Ligands

5 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 7 residues within 4Å: Chain A: R.207, I.208, R.226, D.232, I.288, D.289, Y.615 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.226 Salt bridges: A:D.232, A:D.289, A:E.503 DMS.2: 4 residues within 4Å: Chain A: Y.212, T.213, Q.456, T.619 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.213, A:T.213, A:Q.456 pi-Cation interactions: A:Y.212 DMS.3: 5 residues within 4Å: Chain A: Y.122, G.125, D.179, V.182, S.183 2 PLIP interactions: 2 interactions with chain A Water bridges: A:G.125 Salt bridges: A:D.179 DMS.4: 3 residues within 4Å: Chain A: N.338, D.410, L.412 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.338 DMS.5: 3 residues within 4Å: Chain A: S.492, A.493, S.494 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.494

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rogers, G.W. et al., `The Hunt for Serendipitous Allosteric Sites: Discovery of a novel allosteric inhibitor of the bacterial sialidase NanB. To be published

Release Date

2016-01-20

Peptides

Sialidase B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Sialidase B

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