SMTL ID : 4xkj.1

a Novel D-lactate Dehydrogenase from Sporolactobacillus sp

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.15 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 22 residues within 4Å: Chain A: Y.101, V.106, G.152, A.153, G.154, R.155, I.156, N.174, D.175, I.176, R.179, H.204, V.205, P.206, T.211, A.232, S.233, R.234, D.258, H.295, G.297, F.298 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:Y.101, A:V.106, A:I.156, A:F.298 Hydrogen bonds: A:G.152, A:A.153, A:R.155, A:I.156, A:R.179, A:V.205, A:L.207, A:R.234, A:D.258, A:G.297, A:F.298 Salt bridges: A:R.155, A:R.155 NAD.2: 26 residues within 4Å: Chain B: Y.101, V.106, I.151, G.152, A.153, G.154, R.155, I.156, N.174, D.175, I.176, V.177, R.179, H.204, V.205, P.206, S.210, T.211, L.214, A.232, S.233, R.234, D.258, H.295, G.297, F.298 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:Y.101, B:V.106, B:I.156 Hydrogen bonds: B:Y.101, B:G.152, B:A.153, B:R.155, B:I.156, B:R.179, B:V.205, B:L.207, B:S.210, B:A.232, B:R.234, B:D.258, B:G.297, B:F.298 Salt bridges: B:R.155, B:R.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bo, Y. et al., a Novel D-lactate Dehydrogenase from Sporolactobacillus sp. To Be Published

Release Date

2015-08-05

Peptides

D-lactate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D-lactate dehydrogenase