SMTL ID : 4xkm.2 (1 other biounit)

Crystal structure of Xylose Isomerase from an human intestinal tract microbe Bacteroides thetaiotaomicron

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

8 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: E.254, E.290, D.318, D.361 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.254, A:E.290, A:D.318, A:D.361, H2O.6 MN.2: 5 residues within 4Å: Chain A: E.290, H.293, N.320, D.329, D.331 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.290, A:D.329, A:D.331 MN.3: 4 residues within 4Å: Chain B: E.254, E.290, D.318, D.361 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.254, B:E.290, B:D.318, B:D.361, H2O.19 MN.4: 5 residues within 4Å: Chain B: E.290, H.293, D.329, D.331, D.361 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.290, B:D.329, B:D.331 MN.5: 4 residues within 4Å: Chain C: E.254, E.290, D.318, D.361 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.254, C:E.290, C:D.318, C:D.361, H2O.29 MN.6: 5 residues within 4Å: Chain C: E.290, H.293, D.329, D.331, D.361 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:E.290, C:D.329, C:D.331 MN.7: 4 residues within 4Å: Chain D: E.254, E.290, D.318, D.361 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.254, D:E.290, D:D.318, D:D.361, H2O.40 MN.8: 4 residues within 4Å: Chain D: E.290, H.293, D.329, D.331 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:E.290, D:D.329, D:D.331

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Han, B.G. et al., Crystal structure of a class 2 D-xylose isomerase from the human intestinal tract microbe Bacteroides thetaiotaomicron. Biodesign (2015)

Release Date

2015-12-23

Peptides

Xylose isomerase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
E

D
F

Xylose isomerase

Related Entries With Identical Sequence