SMTL ID : 4xkz.1

Crystal structure of the C-terminal anticodon loop binding domain of a valyl-tRNA synthetase from Pseudomonas aeruginosa

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

4 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.2: 3 residues within 4Å: Chain A: I.46, R.111 Ligands: IOD.3 Ligand excluded by PLIP IOD.3: 1 residues within 4Å: Ligands: IOD.2 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: M.124, F.126, I.127 Ligand excluded by PLIP

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.5: 8 residues within 4Å: Chain A: K.12, N.15, A.16, F.19, C.81, L.85, E.86, K.89 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.89 Water bridges: A:N.15, A:F.19 PGE.6: 6 residues within 4Å: Chain A: A.82, W.83, E.86, M.174, L.175, R.178 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.178, A:R.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Edwards, T.E. et al., Crystal structure of the C-terminal anticodon loop binding domain of a valyl-tRNA synthetase from Pseudomonas aeruginosa. To Be Published

Release Date

2015-02-11

Peptides

Valine-tRNA ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Valine-tRNA ligase