- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- monomer
- Ligands
- 1 x ZN: ZINC ION(Non-covalent)
- 1 x BES: 2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID(Non-covalent)
- 5 x NA: SODIUM ION(Non-functional Binders)
NA.3: 4 residues within 4Å:- Chain A: S.328, D.329, G.331, R.333
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.329, A:R.333
NA.4: 3 residues within 4Å:- Chain A: D.448
- Ligands: GOL.10, MLI.26
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.448, A:D.448
- Water bridges: A:D.449
NA.5: 5 residues within 4Å:- Chain A: R.345, D.562, Q.565, S.566
- Ligands: MLI.24
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.345, A:R.345, A:D.562
NA.6: 6 residues within 4Å:- Chain A: Y.181, L.182, E.260, G.301, N.302, K.315
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.260, A:K.315
NA.7: 3 residues within 4Å:- Chain A: Q.15, I.16, L.134
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:I.16, A:L.134, A:L.134
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.8: 4 residues within 4Å:- Chain A: E.65, P.66, W.67, T.68
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:T.68
GOL.9: 5 residues within 4Å:- Chain A: R.665, V.666, E.667
- Ligands: MLI.18, MLI.23
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:V.666
GOL.10: 6 residues within 4Å:- Chain A: D.448, D.449, Y.450, Q.523
- Ligands: NA.4, MLI.26
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.449, A:D.449, A:Y.450
GOL.11: 9 residues within 4Å:- Chain A: Y.656, Y.660, R.677, Q.699, E.702, A.703, N.704, N.705, D.708
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:Y.656, A:R.677, A:R.677, A:N.704, A:N.704, A:D.708, A:D.708
- Water bridges: A:Q.699, A:N.704, A:N.705
GOL.12: 6 residues within 4Å:- Chain A: K.4, E.119, D.308, W.309, F.310, M.368
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.4, A:W.309
- Water bridges: A:M.368
GOL.13: 5 residues within 4Å:- Chain A: Q.37, N.63, R.85, F.86, T.87
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Q.37, A:T.87, A:T.87
- Water bridges: A:F.86, A:F.86
- 13 x MLI: MALONATE ION(Non-functional Binders)
MLI.14: 6 residues within 4Å:- Chain A: R.637, E.638, T.641, R.682, F.686, A.718
5 PLIP interactions:5 interactions with chain A- Water bridges: A:R.637, A:R.637
- Salt bridges: A:R.637, A:R.637, A:R.682
MLI.15: 8 residues within 4Å:- Chain A: L.285, G.331, S.332, V.335, N.336, H.668, I.671, A.672
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:H.668
- Hydrogen bonds: A:S.332, A:N.336, A:A.672
- Salt bridges: A:H.668
MLI.16: 2 residues within 4Å:- Chain A: Q.581, Q.583
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:Q.581, A:Q.583
- Hydrogen bonds: A:Q.583
MLI.17: 3 residues within 4Å:- Chain A: T.280, K.282
- Ligands: MLI.22
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.280, A:D.283
- Salt bridges: A:K.282
MLI.18: 3 residues within 4Å:- Chain A: R.665, E.667
- Ligands: GOL.9
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.667
- Salt bridges: A:R.665
MLI.19: 5 residues within 4Å:- Chain A: D.252, N.738, G.739, L.740, R.777
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:G.739, A:L.740
- Water bridges: A:D.252, A:N.774, A:R.777
- Salt bridges: A:R.777
MLI.20: 7 residues within 4Å:- Chain A: Q.463, R.464, T.465, K.474, Q.475, P.476, A.511
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:T.465
MLI.21: 6 residues within 4Å:- Chain A: Y.372, L.374, Y.377, E.378, R.821
- Ligands: BES.2
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.821
MLI.22: 6 residues within 4Å:- Chain A: R.674, T.675, N.678, A.679, T.707
- Ligands: MLI.17
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:T.675
- Hydrogen bonds: A:R.674, A:N.678
MLI.23: 3 residues within 4Å:- Chain A: V.666, E.667
- Ligands: GOL.9
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:E.667
- Hydrogen bonds: A:V.666
MLI.24: 8 residues within 4Å:- Chain A: A.527, L.528, L.538, W.542, D.562, A.563, S.566
- Ligands: NA.5
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:L.528, A:D.562, A:S.566
MLI.25: 3 residues within 4Å:- Chain A: Q.545, Q.546, F.549
2 PLIP interactions:2 interactions with chain A- Water bridges: A:S.543, A:Q.546
MLI.26: 10 residues within 4Å:- Chain A: D.448, D.449, Y.450, Y.457, Q.523, P.524, Y.540, Q.546
- Ligands: NA.4, GOL.10
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.523, A:Q.546
- Water bridges: A:D.448, A:D.448
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Addlagatta, A. et al., Crystal Structure of Met260Ala mutant of E. coli Aminopeptidase N in complex with Bestatin. To Be Published
- Release Date
- 2016-02-10
- Peptides
- Aminopeptidase N: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- monomer
- Ligands
- 1 x ZN: ZINC ION(Non-covalent)
- 1 x BES: 2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID(Non-covalent)
- 5 x NA: SODIUM ION(Non-functional Binders)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 13 x MLI: MALONATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Addlagatta, A. et al., Crystal Structure of Met260Ala mutant of E. coli Aminopeptidase N in complex with Bestatin. To Be Published
- Release Date
- 2016-02-10
- Peptides
- Aminopeptidase N: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A