SMTL ID : 4xon.1

Tailspike protein double mutant D339N/E372Q of E. coli bacteriophage HK620

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-trimer

Ligands

3 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 4 residues within 4Å: Chain A: D.560, I.583, G.584, R.587 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.560, A:R.587, A:R.587 Water bridges: A:D.560 TRS.6: 4 residues within 4Å: Chain B: D.560, I.583, G.584, R.587 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.560, B:R.587, B:R.587 Water bridges: B:D.560 TRS.11: 4 residues within 4Å: Chain C: D.560, I.583, G.584, R.587 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:D.560, C:R.587, C:R.587 Water bridges: C:D.560

9 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 3 residues within 4Å: Chain A: Y.487, A.514, N.515 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.515, A:N.515 FMT.3: 6 residues within 4Å: Chain A: V.524, N.525, S.539, T.540, D.541, Y.544 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.525, A:N.525, A:T.540, A:D.541 FMT.4: 4 residues within 4Å: Chain A: R.30, D.34 Chain B: W.43, V.53 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.30, A:D.34 FMT.7: 3 residues within 4Å: Chain B: Y.487, A.514, N.515 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.515, B:N.515 FMT.8: 6 residues within 4Å: Chain B: V.524, N.525, S.539, T.540, D.541, Y.544 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.525, B:N.525, B:T.540, B:D.541 FMT.9: 4 residues within 4Å: Chain B: R.30, D.34 Chain C: W.43, V.53 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.30, B:D.34 FMT.12: 3 residues within 4Å: Chain C: Y.487, A.514, N.515 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.515, C:N.515 FMT.13: 6 residues within 4Å: Chain C: V.524, N.525, S.539, T.540, D.541, Y.544 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.525, C:N.525, C:T.540, C:D.541 FMT.14: 4 residues within 4Å: Chain A: W.43, V.53 Chain C: R.30, D.34 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.30, C:D.34

3 x NA: SODIUM ION(Non-functional Binders)

NA.5: 3 residues within 4Å: Chain A: A.455, S.482, Q.484 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.482 NA.10: 3 residues within 4Å: Chain B: A.455, S.482, Q.484 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.455 NA.15: 3 residues within 4Å: Chain C: A.455, S.482, Q.484 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.484

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gohlke, U. et al., Enthalpic cost of water removal from a hydrophobic glucose binding cavity on HK620 tailspike protein. to be published

Release Date

2016-01-27

Peptides

Tail spike protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Tail spike protein