SMTL ID : 4xqj.1 (1 other biounit)

Crystal structure of AgrA LytTR domain in complex with promoters

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

8 x EOH: ETHANOL(Non-functional Binders)

EOH.1: 5 residues within 4Å: Chain A: R.8, Q.40, I.41, E.42 Ligands: EOH.2 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:E.42 EOH.2: 2 residues within 4Å: Chain A: R.8 Ligands: EOH.1 No protein-ligand interaction detected (PLIP) EOH.3: 5 residues within 4Å: Chain A: E.5, L.6, K.7, F.43, Y.44 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.7 EOH.4: 5 residues within 4Å: Chain A: R.8, R.31, E.42, Y.44 Ligands: EOH.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.31, A:R.31, A:E.42 Water bridges: A:K.28 EOH.5: 6 residues within 4Å: Chain A: R.8, S.10, N.11 Chain C: A.1, A.2 Ligands: EOH.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.10 EOH.6: 4 residues within 4Å: Chain A: R.59, N.62, N.95 Chain C: C.10 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.95, A:N.95 EOH.7: 5 residues within 4Å: Chain A: F.22, E.24, F.64, H.88, C.89 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.64 Hydrogen bonds: A:H.88 EOH.11: 1 residues within 4Å: Chain B: T.12 No protein-ligand interaction detected (PLIP)

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.9: 2 residues within 4Å: Chain A: V.1, E.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.17 Water bridges: A:T.3 EDO.10: 2 residues within 4Å: Chain A: Q.16, D.19 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.19 Water bridges: A:Q.16 EDO.12: 2 residues within 4Å: Chain C: T.7, A.8 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rajasree, K. et al., Conformational features of theStaphylococcus aureusAgrA-promoter interactions rationalize quorum-sensing triggered gene expression. Biochem Biophys Rep (2016)

Release Date

2016-04-06

Peptides

Accessory gene regulator A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Accessory gene regulator A

Related Entries With Identical Sequence