SMTL ID : 4xr9.1

Crystal structure of CalS8 from Micromonospora echinospora cocrystallized with NAD and TDP-glucose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

1 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 22 residues within 4Å: Chain A: G.22, G.24, Y.25, V.26, V.44, D.45, S.46, D.47, Y.85, T.97, V.98, G.99, T.100, Q.112, A.115, A.116, S.134, T.135, E.167, L.169, E.171, K.221 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:V.26, A:E.167 Hydrogen bonds: A:Y.25, A:V.26, A:S.46, A:S.46, A:D.47, A:Y.85, A:V.98, A:T.100, A:T.100, A:T.100, A:Q.112, A:T.135, A:T.135, A:E.171 Water bridges: A:G.27, A:D.47, A:D.47, A:R.350

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 1 residues within 4Å: Chain A: G.246 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.246

1 x TMP: THYMIDINE-5'-PHOSPHATE(Non-covalent)

TMP.3: 11 residues within 4Å: Chain A: V.232, L.269, L.270, G.274, V.275, G.276, L.280, F.342, K.343, R.433 Chain B: K.261 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:V.232 Hydrogen bonds: A:L.270, A:L.270, A:G.276, A:G.276, A:R.433 Salt bridges: A:K.343, B:K.261

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain B: R.201, G.205, V.206, D.207 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.201

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Michalska, K. et al., Crystal structure of CalS8 from Micromonospora echinospora. To Be Published

Release Date

2015-02-11

Peptides

CalS8: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

CalS8

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