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SMTL ID : 4xsc.1
(1 other biounit)
Complex structure of thymidylate synthase from varicella zoster virus with a phosphorylated BVDU
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.90 Å
Oligo State
homo-dimer
Ligands
2 x
BVP
:
(E)-5-(2-BROMOVINYL)-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
(Non-covalent)
BVP.1:
18 residues within 4Å:
Chain A:
R.54
,
W.113
,
Y.139
,
C.199
,
H.200
,
Q.218
,
R.219
,
S.220
,
G.221
,
D.222
,
G.226
,
V.227
,
N.230
,
H.260
,
Y.262
Chain B:
R.179
,
R.180
Ligands:
1PE.2
14
PLIP interactions
:
11 interactions with chain A
,
3 interactions with chain B
Hydrophobic interactions:
A:D.222
Hydrogen bonds:
A:H.200
,
A:Q.218
,
A:S.220
,
A:D.222
,
A:V.227
,
A:N.230
,
A:N.230
,
A:H.260
Salt bridges:
A:R.54
,
A:R.219
,
B:R.179
,
B:R.180
Water bridges:
B:R.179
BVP.3:
16 residues within 4Å:
Chain A:
R.179
,
R.180
Chain B:
R.54
,
C.199
,
H.200
,
Q.218
,
R.219
,
S.220
,
G.221
,
D.222
,
G.226
,
V.227
,
N.230
,
H.260
,
Y.262
Ligands:
1PE.4
15
PLIP interactions
:
13 interactions with chain B
,
2 interactions with chain A
Hydrophobic interactions:
B:D.222
Hydrogen bonds:
B:Q.218
,
B:S.220
,
B:S.220
,
B:D.222
,
B:G.226
,
B:V.227
,
B:N.230
,
B:N.230
,
B:H.260
,
B:Y.262
Salt bridges:
B:R.54
,
B:R.219
,
A:R.179
,
A:R.180
2 x
1PE
:
PENTAETHYLENE GLYCOL
(Non-functional Binders)
1PE.2:
4 residues within 4Å:
Chain A:
E.91
,
I.112
,
F.229
Ligands:
BVP.1
No protein-ligand interaction detected (PLIP)
1PE.4:
5 residues within 4Å:
Chain B:
I.112
,
W.113
,
Y.116
,
F.229
Ligands:
BVP.3
1
PLIP interactions
:
1 interactions with chain B
Hydrogen bonds:
B:Y.116
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Hew, K. et al., Structure of the Varicella Zoster Virus Thymidylate Synthase Establishes Functional and Structural Similarities as the Human Enzyme and Potentiates Itself as a Target of Brivudine. Plos One (2015)
Release Date
2015-12-16
Peptides
Thymidylate synthase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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Thymidylate synthase
Related Entries With Identical Sequence
4xsc.2
|
4xsd.1
|
4xsd.2
|
4xse.1
|
4xse.2
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Tube
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