SMTL ID : 4xsc.2 (1 other biounit)

Complex structure of thymidylate synthase from varicella zoster virus with a phosphorylated BVDU

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

2 x BVP: (E)-5-(2-BROMOVINYL)-2'-DEOXYURIDINE-5'-MONOPHOSPHATE(Non-covalent)

BVP.1: 19 residues within 4Å: Chain A: R.54, W.113, Y.139, L.196, C.199, H.200, Q.218, R.219, S.220, G.221, D.222, G.226, V.227, N.230, H.260, Y.262 Chain B: R.179, R.180 Ligands: 1PE.2 11 PLIP interactions: 9 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:D.222 Hydrogen bonds: A:Q.218, A:S.220, A:D.222, A:N.230, A:N.230, A:H.260 Salt bridges: A:R.54, A:R.219, B:R.179, B:R.180 BVP.3: 14 residues within 4Å: Chain A: R.179, R.180 Chain B: R.54, C.199, Q.218, R.219, S.220, D.222, G.226, V.227, N.230, H.260, Y.262 Ligands: 1PE.4 13 PLIP interactions: 2 interactions with chain A, 11 interactions with chain B Salt bridges: A:R.179, A:R.180, B:R.54, B:R.219 Hydrophobic interactions: B:D.222 Hydrogen bonds: B:D.53, B:Q.218, B:S.220, B:D.222, B:N.230, B:N.230, B:H.260, B:Y.262

2 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.2: 5 residues within 4Å: Chain A: I.112, W.113, L.196, F.229 Ligands: BVP.1 No protein-ligand interaction detected (PLIP) 1PE.4: 6 residues within 4Å: Chain B: I.112, W.113, Y.116, G.226, F.229 Ligands: BVP.3 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:I.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hew, K. et al., Structure of the Varicella Zoster Virus Thymidylate Synthase Establishes Functional and Structural Similarities as the Human Enzyme and Potentiates Itself as a Target of Brivudine. Plos One (2015)

Release Date

2015-12-16

Peptides

Thymidylate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Thymidylate synthase

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