SMTL ID : 4xyo.1

Structure of AgrA LytTR domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: F.22, E.24, F.64, H.88, Y.90 5 PLIP interactions: 5 interactions with chain A Water bridges: A:E.87, A:E.87, A:H.88, A:Y.90, A:Y.90 EDO.2: 1 residues within 4Å: Chain A: R.39 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.39 Water bridges: A:R.39 EDO.3: 4 residues within 4Å: Chain A: N.85, K.86, E.87 Ligands: EDO.4 No protein-ligand interaction detected (PLIP) EDO.4: 7 residues within 4Å: Chain A: D.37, N.38, R.39, Q.40, N.85, E.87 Ligands: EDO.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.40 Water bridges: A:H.35 EDO.5: 3 residues within 4Å: Chain A: T.27, S.29, H.30 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rajasree, K. et al., Conformational features of theStaphylococcus aureusAgrA-promoter interactions rationalize quorum-sensing triggered gene expression. Biochem Biophys Rep (2016)

Release Date

2016-04-06

Peptides

Accessory gene regulator A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Accessory gene regulator A

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