- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-10-mer
- Ligands
- 10 x GOL: GLYCEROL(Non-functional Binders)
- 4 x PDO: 1,3-PROPANDIOL(Covalent)
PDO.2: 13 residues within 4Å:- Chain B: D.6, T.26, T.27, N.28, L.31, K.86, N.108, T.110, S.130, Y.132, L.164, A.166
- Ligands: G3P.3
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:K.86
- Hydrogen bonds: B:D.6, B:T.26, B:N.28, B:N.108, B:S.130, B:S.130
- Water bridges: B:K.86
PDO.6: 13 residues within 4Å:- Chain C: D.6, T.26, T.27, N.28, L.31, K.86, N.108, T.110, S.130, Y.132, L.164, A.166
- Ligands: G3P.7
7 PLIP interactions:7 interactions with chain C- Hydrophobic interactions: C:K.86
- Hydrogen bonds: C:D.6, C:T.26, C:N.28, C:N.108, C:S.130, C:S.130
PDO.15: 13 residues within 4Å:- Chain G: D.6, T.26, T.27, N.28, L.31, K.86, N.108, T.110, S.130, Y.132, L.164, A.166
- Ligands: G3P.16
7 PLIP interactions:7 interactions with chain G- Hydrophobic interactions: G:K.86
- Hydrogen bonds: G:D.6, G:N.28, G:K.86, G:N.108, G:S.130, G:S.130
PDO.19: 13 residues within 4Å:- Chain H: D.6, T.26, T.27, N.28, L.31, K.86, N.108, T.110, S.130, Y.132, L.164, A.166
- Ligands: G3P.20
6 PLIP interactions:6 interactions with chain H- Hydrophobic interactions: H:K.86
- Hydrogen bonds: H:D.6, H:N.28, H:N.108, H:S.130, H:S.130
- 4 x G3P: SN-GLYCEROL-3-PHOSPHATE(Non-covalent)
G3P.3: 8 residues within 4Å:- Chain B: D.6, N.28, Y.132, R.135, A.166, S.167, R.169
- Ligands: PDO.2
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:D.6, B:S.167, B:S.167
- Water bridges: B:I.168, B:I.168
- Salt bridges: B:R.135, B:R.169
G3P.7: 8 residues within 4Å:- Chain C: D.6, N.28, Y.132, R.135, A.166, S.167, R.169
- Ligands: PDO.6
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:S.167
- Water bridges: C:D.6, C:D.6, C:N.28, C:I.168
- Salt bridges: C:R.135, C:R.169
G3P.16: 8 residues within 4Å:- Chain G: D.6, N.28, Y.132, R.135, A.166, S.167, R.169
- Ligands: PDO.15
7 PLIP interactions:7 interactions with chain G- Hydrogen bonds: G:D.6, G:S.167, G:S.167
- Water bridges: G:I.168, G:I.168
- Salt bridges: G:R.135, G:R.169
G3P.20: 8 residues within 4Å:- Chain H: D.6, N.28, Y.132, R.135, A.166, S.167, R.169
- Ligands: PDO.19
5 PLIP interactions:5 interactions with chain H- Hydrogen bonds: H:S.167
- Water bridges: H:N.28, H:I.168
- Salt bridges: H:R.135, H:R.169
- 8 x ACT: ACETATE ION(Non-functional Binders)
ACT.5: 4 residues within 4Å:- Chain B: R.169, N.170
- Chain I: R.169, N.170
5 PLIP interactions:1 interactions with chain B, 4 interactions with chain I- Hydrogen bonds: B:N.170, I:N.170
- Hydrophobic interactions: I:R.169
- Water bridges: I:R.169, I:R.169
ACT.9: 5 residues within 4Å:- Chain C: R.169, N.170
- Chain H: R.169, N.170
- Ligands: ACT.22
3 PLIP interactions:1 interactions with chain H, 2 interactions with chain C- Hydrogen bonds: H:N.170, C:N.170
- Hydrophobic interactions: C:R.169
ACT.12: 4 residues within 4Å:- Chain E: R.169, N.170
- Chain F: R.169, N.170
4 PLIP interactions:3 interactions with chain E, 1 interactions with chain F- Hydrophobic interactions: E:R.169
- Hydrogen bonds: E:N.170, F:N.170
- Water bridges: E:R.169
ACT.13: 6 residues within 4Å:- Chain E: R.151, F.154, N.155, I.158, I.159, K.160
7 PLIP interactions:7 interactions with chain E- Hydrophobic interactions: E:I.158, E:K.160
- Hydrogen bonds: E:I.159, E:I.159
- Water bridges: E:R.151, E:N.155
- Salt bridges: E:R.151
ACT.18: 4 residues within 4Å:- Chain D: R.169, N.170
- Chain G: R.169, N.170
5 PLIP interactions:4 interactions with chain D, 1 interactions with chain G- Hydrophobic interactions: D:R.169
- Hydrogen bonds: D:N.170, G:N.170
- Water bridges: D:R.169, D:R.169
ACT.22: 5 residues within 4Å:- Chain C: R.169, N.170
- Chain H: R.169, N.170
- Ligands: ACT.9
3 PLIP interactions:2 interactions with chain H, 1 interactions with chain C- Hydrophobic interactions: H:R.169
- Hydrogen bonds: H:N.170, C:N.170
ACT.25: 4 residues within 4Å:- Chain A: R.169, N.170
- Chain J: R.169, N.170
4 PLIP interactions:1 interactions with chain A, 3 interactions with chain J- Hydrogen bonds: A:N.170, J:N.170
- Hydrophobic interactions: J:R.169
- Water bridges: J:R.169
ACT.26: 6 residues within 4Å:- Chain J: R.151, F.154, N.155, I.158, I.159, K.160
7 PLIP interactions:7 interactions with chain J- Hydrophobic interactions: J:I.158, J:K.160
- Hydrogen bonds: J:I.159, J:I.159
- Water bridges: J:R.151, J:N.155
- Salt bridges: J:R.151
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sautner, V. et al., Converting Transaldolase into Aldolase through Swapping of the Multifunctional Acid-Base Catalyst: Common and Divergent Catalytic Principles in F6P Aldolase and Transaldolase. Biochemistry (2015)
- Release Date
- 2015-09-30
- Peptides
- Probable transaldolase: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-10-mer
- Ligands
- 10 x GOL: GLYCEROL(Non-functional Binders)
- 4 x PDO: 1,3-PROPANDIOL(Covalent)
- 4 x G3P: SN-GLYCEROL-3-PHOSPHATE(Non-covalent)
- 8 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sautner, V. et al., Converting Transaldolase into Aldolase through Swapping of the Multifunctional Acid-Base Catalyst: Common and Divergent Catalytic Principles in F6P Aldolase and Transaldolase. Biochemistry (2015)
- Release Date
- 2015-09-30
- Peptides
- Probable transaldolase: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
E