SMTL ID : 4y4l.2 (1 other biounit)

Crystal structure of yeast Thi4-C205S

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-octamer

Ligands

8 x 48N: (2E)-2-[(2S,4R)-5-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-4-oxidanyl-3-oxidanylidene-pentan-2-yl]iminoethanoic acid(Non-covalent)

48N.1: 31 residues within 4Å: Chain A: V.91, G.92, G.94, S.95, S.96, I.116, E.117, S.118, S.119, G.124, G.125, T.188, C.189, V.190, T.254, T.255, G.256, H.257, F.261, F.264, G.310, M.311, R.321, M.322, G.323, T.325, F.326, M.329 Chain G: S.225, D.227, P.228 26 PLIP interactions: 25 interactions with chain A, 1 interactions with chain G Hydrogen bonds: A:S.95, A:S.95, A:S.96, A:S.96, A:S.96, A:S.118, A:S.119, A:S.119, A:G.125, A:V.190, A:V.190, A:G.256, A:M.311, A:M.322, A:G.323, G:S.225 Water bridges: A:G.94, A:S.95, A:G.97, A:S.119, A:S.119, A:S.126, A:H.257, A:E.312 Salt bridges: A:H.257, A:R.321 48N.2: 32 residues within 4Å: Chain B: V.91, G.92, A.93, G.94, S.95, S.96, I.116, E.117, S.118, S.119, G.124, G.125, S.126, T.188, C.189, V.190, T.254, T.255, G.256, H.257, F.261, F.264, G.310, M.311, R.321, M.322, G.323, T.325, F.326, M.329 Chain F: D.227, P.228 28 PLIP interactions: 28 interactions with chain B Hydrogen bonds: B:S.95, B:S.95, B:S.96, B:S.96, B:S.96, B:S.118, B:S.119, B:S.119, B:G.124, B:G.125, B:V.190, B:V.190, B:G.256, B:M.311, B:M.322, B:G.323 Water bridges: B:G.94, B:S.95, B:S.95, B:G.97, B:S.119, B:S.119, B:S.119, B:S.119, B:H.257, B:E.312 Salt bridges: B:H.257, B:R.321 48N.3: 31 residues within 4Å: Chain C: V.91, G.92, G.94, S.95, S.96, I.116, E.117, S.118, S.119, G.124, G.125, T.188, C.189, V.190, T.254, T.255, G.256, H.257, F.261, F.264, G.310, M.311, R.321, M.322, G.323, T.325, F.326, M.329 Chain E: S.225, D.227, P.228 26 PLIP interactions: 25 interactions with chain C, 1 interactions with chain E Hydrogen bonds: C:S.95, C:S.95, C:S.96, C:S.96, C:S.96, C:S.118, C:S.119, C:S.119, C:G.125, C:V.190, C:V.190, C:G.256, C:M.311, C:M.322, C:G.323, E:S.225 Water bridges: C:G.94, C:S.95, C:G.97, C:S.119, C:S.119, C:S.126, C:H.257, C:E.312 Salt bridges: C:H.257, C:R.321 48N.4: 32 residues within 4Å: Chain D: V.91, G.92, A.93, G.94, S.95, S.96, I.116, E.117, S.118, S.119, G.124, G.125, S.126, T.188, C.189, V.190, T.254, T.255, G.256, H.257, F.261, F.264, G.310, M.311, R.321, M.322, G.323, T.325, F.326, M.329 Chain H: D.227, P.228 28 PLIP interactions: 28 interactions with chain D Hydrogen bonds: D:S.95, D:S.95, D:S.96, D:S.96, D:S.96, D:S.118, D:S.119, D:S.119, D:G.124, D:G.125, D:V.190, D:V.190, D:G.256, D:M.311, D:M.322, D:G.323 Water bridges: D:G.94, D:S.95, D:S.95, D:G.97, D:S.119, D:S.119, D:S.119, D:S.119, D:H.257, D:E.312 Salt bridges: D:H.257, D:R.321 48N.5: 31 residues within 4Å: Chain A: S.225, D.227, P.228 Chain E: V.91, G.92, G.94, S.95, S.96, I.116, E.117, S.118, S.119, G.124, G.125, T.188, C.189, V.190, T.254, T.255, G.256, H.257, F.261, F.264, G.310, M.311, R.321, M.322, G.323, T.325, F.326, M.329 26 PLIP interactions: 25 interactions with chain E, 1 interactions with chain A Hydrogen bonds: E:S.95, E:S.95, E:S.96, E:S.96, E:S.96, E:S.118, E:S.119, E:S.119, E:G.125, E:V.190, E:V.190, E:G.256, E:M.311, E:M.322, E:G.323, A:S.225 Water bridges: E:G.94, E:S.95, E:G.97, E:S.119, E:S.119, E:S.126, E:H.257, E:E.312 Salt bridges: E:H.257, E:R.321 48N.6: 32 residues within 4Å: Chain D: D.227, P.228 Chain F: V.91, G.92, A.93, G.94, S.95, S.96, I.116, E.117, S.118, S.119, G.124, G.125, S.126, T.188, C.189, V.190, T.254, T.255, G.256, H.257, F.261, F.264, G.310, M.311, R.321, M.322, G.323, T.325, F.326, M.329 28 PLIP interactions: 28 interactions with chain F Hydrogen bonds: F:S.95, F:S.95, F:S.96, F:S.96, F:S.96, F:S.118, F:S.119, F:S.119, F:G.124, F:G.125, F:V.190, F:V.190, F:G.256, F:M.311, F:M.322, F:G.323 Water bridges: F:G.94, F:S.95, F:S.95, F:G.97, F:S.119, F:S.119, F:S.119, F:S.119, F:H.257, F:E.312 Salt bridges: F:H.257, F:R.321 48N.7: 31 residues within 4Å: Chain C: S.225, D.227, P.228 Chain G: V.91, G.92, G.94, S.95, S.96, I.116, E.117, S.118, S.119, G.124, G.125, T.188, C.189, V.190, T.254, T.255, G.256, H.257, F.261, F.264, G.310, M.311, R.321, M.322, G.323, T.325, F.326, M.329 26 PLIP interactions: 25 interactions with chain G, 1 interactions with chain C Hydrogen bonds: G:S.95, G:S.95, G:S.96, G:S.96, G:S.96, G:S.118, G:S.119, G:S.119, G:G.125, G:V.190, G:V.190, G:G.256, G:M.311, G:M.322, G:G.323, C:S.225 Water bridges: G:G.94, G:S.95, G:G.97, G:S.119, G:S.119, G:S.126, G:H.257, G:E.312 Salt bridges: G:H.257, G:R.321 48N.8: 32 residues within 4Å: Chain B: D.227, P.228 Chain H: V.91, G.92, A.93, G.94, S.95, S.96, I.116, E.117, S.118, S.119, G.124, G.125, S.126, T.188, C.189, V.190, T.254, T.255, G.256, H.257, F.261, F.264, G.310, M.311, R.321, M.322, G.323, T.325, F.326, M.329 28 PLIP interactions: 28 interactions with chain H Hydrogen bonds: H:S.95, H:S.95, H:S.96, H:S.96, H:S.96, H:S.118, H:S.119, H:S.119, H:G.124, H:G.125, H:V.190, H:V.190, H:G.256, H:M.311, H:M.322, H:G.323 Water bridges: H:G.94, H:S.95, H:S.95, H:G.97, H:S.119, H:S.119, H:S.119, H:S.119, H:H.257, H:E.312 Salt bridges: H:H.257, H:R.321

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, X. et al., Structural Basis for Iron-Mediated Sulfur Transfer in Archael and Yeast Thiazole Synthases. Biochemistry (2016)

Release Date

2016-03-09

Peptides

Thiamine thiazole synthase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
C

D
D

E
C

F
D

G
C

H
D

Thiamine thiazole synthase

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