SMTL ID : 4y5f.1

PAS-GAF fragment from Deinococcus radiodurans BphP assembled with BV - Y307S, high dose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x LBV: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid(Covalent)

LBV.1: 25 residues within 4Å: Chain A: C.21, E.24, I.26, M.171, Y.173, F.195, F.200, S.203, D.204, I.205, P.206, Y.213, R.219, R.251, T.253, S.254, M.256, H.257, Y.260, M.264, S.269, L.270, S.271, L.283, H.287 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:I.26, A:Y.173, A:F.195, A:F.200, A:F.200, A:D.204, A:I.205, A:I.205, A:P.206, A:Y.213, A:H.257, A:Y.260, A:L.283 Hydrogen bonds: A:D.204, A:D.204, A:Y.213, A:S.254, A:H.257, A:S.269 Water bridges: A:D.204, A:R.251, A:R.251, A:L.270, A:L.270, A:H.287 Salt bridges: A:R.251, A:H.257 pi-Stacking: A:H.257

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, F. et al., X-ray radiation induces deprotonation of the bilin chromophore in crystalline D. radiodurans phytochrome. J.Am.Chem.Soc. (2015)

Release Date

2015-05-20

Peptides

Bacteriophytochrome: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bacteriophytochrome

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