4y5g.1 | SWISS-MODEL Template Library

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SMTL ID : 4y5g.1

Endothiapepsin in complex with fragment 272

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

monomer

Ligands

1 x 47U: N-(pyridin-2-yl)-2-(1,3,5-trimethyl-1H-pyrazol-4-yl)acetamide(Non-covalent)

47U.1:

13 residues within 4Å:

Chain A: D.35, Y.79, G.80, D.81, S.83, F.116, L.125, G.221, T.222, Y.226, I.300, I.304
Ligands: DMS.4

13 PLIP interactions:

13 interactions with chain A

Hydrophobic interactions: A:Y.79, A:Y.79, A:Y.79, A:D.81, A:L.125, A:T.222, A:I.300, A:I.304
Hydrogen bonds: A:G.80, A:D.81, A:T.222
Water bridges: A:T.222, A:T.222

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2:

6 residues within 4Å:

Chain A: V.272, P.274, Y.277, A.312, S.329, K.330

4 PLIP interactions:

4 interactions with chain A

Hydrogen bonds: A:V.272, A:K.330, A:K.330
Water bridges: A:V.272

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3:

5 residues within 4Å:

Chain A: C.255, D.279, G.281, P.282, C.290

1 PLIP interactions:

1 interactions with chain A

Hydrogen bonds: A:D.279

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4:

6 residues within 4Å:

Chain A: D.81, G.221, T.222, T.223, L.224
Ligands: 47U.1

3 PLIP interactions:

3 interactions with chain A

Hydrogen bonds: A:T.223
Water bridges: A:L.224
Salt bridges: A:D.81

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Wang, X. et al., Crystallographic Fragment Sreening of an Entire Library. to be published

Release Date

2016-03-02

Peptides

Endothiapepsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Endothiapepsin

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