4y5p.1 | SWISS-MODEL Template Library

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SMTL ID : 4y5p.1

Endothiapepsin in complex with fragment 338

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.23 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1:	6 residues within 4Å: Chain A: V.272, P.274, Y.277, A.312, S.329, K.330 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.272, A:S.329, A:K.330, A:K.330 Water bridges: A:V.272
GOL.2:	2 residues within 4Å: Chain A: T.8, P.166 No protein-ligand interaction detected (PLIP)
GOL.3:	6 residues within 4Å: Chain A: Y.202, K.210, T.212, P.228, T.230, V.231 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.212 Water bridges: A:T.230

1 x 483: 2-(1H-imidazol-1-yl)-N-(trans-4-methylcyclohexyl)acetamide(Non-covalent)

483.4:

11 residues within 4Å:

Chain A: D.35, Y.79, G.80, D.81, F.116, L.125, G.221, T.222, Y.226, I.300, I.304

7 PLIP interactions:

7 interactions with chain A

Hydrophobic interactions: A:Y.226, A:I.300, A:I.304
Hydrogen bonds: A:G.80, A:D.81
Water bridges: A:G.221
pi-Stacking: A:Y.79

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.5:

5 residues within 4Å:

Chain A: C.255, D.279, G.281, P.282, C.290

2 PLIP interactions:

2 interactions with chain A

Hydrogen bonds: A:D.279, A:G.281

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.6:

4 residues within 4Å:

Chain A: S.4, A.5, T.6, T.168

1 PLIP interactions:

1 interactions with chain A

Water bridges: A:T.6

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Fu, K. et al., Crystallographic Fragment Screening of an Entire Library. To Be Published

Release Date

2016-03-02

Peptides

Endothiapepsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Endothiapepsin

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