SMTL ID : 4y5s.1

Structure of FtmOx1 with a-Ketoglutarate as co-substrate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.54 Å

Oligo State

homo-dimer

Ligands

2 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.1: 10 residues within 4Å: Chain A: Q.129, H.132, D.134, T.169, H.208, G.210, R.221, L.225, Y.227 Ligands: FE2.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.225 Hydrogen bonds: A:Q.129, A:T.169 Salt bridges: A:H.132, A:R.221 AKG.3: 11 residues within 4Å: Chain B: R.120, Q.129, H.132, D.134, T.169, H.208, G.210, R.221, L.225, Y.227 Ligands: FE2.4 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:L.225 Hydrogen bonds: B:R.120, B:Q.129, B:Q.129, B:T.169 Salt bridges: B:H.132, B:R.221

2 x FE2: FE (II) ION(Non-covalent)

FE2.2: 4 residues within 4Å: Chain A: H.132, D.134, H.208 Ligands: AKG.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.132, A:D.134, A:D.134, A:H.208, H2O.1 FE2.4: 4 residues within 4Å: Chain B: H.132, D.134, H.208 Ligands: AKG.3 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.132, B:D.134, B:D.134, B:H.208, H2O.4

1 x CO: COBALT (II) ION(Non-covalent)

CO.5: 2 residues within 4Å: Chain B: E.185, D.187 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.185, B:E.185, B:D.187, B:D.187

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, W. et al., Endoperoxide formation by an alpha-ketoglutarate-dependent mononuclear non-haem iron enzyme. Nature (2015)

Release Date

2015-11-04

Peptides

Verruculogen synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Verruculogen synthase

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