SMTL ID : 4y6m.1 (2 other biounits)

Structure of plasmepsin II from Plasmodium falciparum complexed with inhibitor PG418

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

monomer

Ligands

1 x 48Q: ~{N}1-[(~{Z},3~{R})-4-[2-(3-methoxyphenyl)propan-2-ylamino]-3-oxidanyl-1-phenyl-but-1-en-2-yl]-5-piperidin-1-yl-~{N}3,~{N}3-dipropyl-benzene-1,3-dicarboxamide(Non-covalent)

48Q.1: 19 residues within 4Å: Chain A: I.32, D.34, G.36, S.37, V.78, F.111, T.114, S.118, I.123, Y.192, D.214, G.216, T.217, S.218, T.221, I.290, L.292, F.294, I.300 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.32, A:V.78, A:F.111, A:T.114, A:I.123, A:I.290, A:L.292, A:F.294, A:I.300 Hydrogen bonds: A:D.34, A:D.214, A:G.216, A:T.217, A:S.218 Water bridges: A:V.78

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 1 residues within 4Å: Chain A: V.239 No protein-ligand interaction detected (PLIP) GOL.3: 4 residues within 4Å: Chain A: T.92, N.95, L.96, S.97 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.97 Water bridges: A:Q.26, A:K.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Recacha, R. et al., Structures of plasmepsin II from Plasmodium falciparum in complex with two hydroxyethylamine-based inhibitors. Acta Crystallogr.,Sect.F (2015)

Release Date

2015-12-09

Peptides

Plasmepsin-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Plasmepsin-2

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