SMTL ID : 4y6s.1

Structure of Plasmodium falciparum DXR in complex with a beta-substituted fosmidomycin analogue, RC134, and manganese

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: K.139, D.165, E.167, E.249 Ligands: 48S.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.165, A:E.167, A:E.167, A:E.249 MN.3: 5 residues within 4Å: Chain B: K.139, D.165, E.167, E.249 Ligands: 48S.4 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.165, B:E.167, B:E.167, B:E.249

2 x 48S: [(2R)-4-[hydroxy(methyl)amino]-2-(4-methylphenyl)-4-oxobutyl]phosphonic acid(Non-covalent)

48S.2: 16 residues within 4Å: Chain A: K.139, D.165, S.166, E.167, S.203, S.204, W.230, M.232, I.236, T.237, S.240, N.245, K.246, E.249, M.294 Ligands: MN.1 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:M.232, A:T.237 Hydrogen bonds: A:K.139, A:S.166, A:S.203, A:S.203, A:S.204, A:N.245, A:K.246 Water bridges: A:S.203, A:G.205, A:G.205, A:K.246 Salt bridges: A:D.165, A:E.167, A:E.249 48S.4: 17 residues within 4Å: Chain B: K.139, D.165, S.166, E.167, S.203, S.204, P.228, W.230, M.232, I.236, T.237, S.240, N.245, K.246, E.249, M.294 Ligands: MN.3 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:P.228, B:M.232, B:T.237 Hydrogen bonds: B:K.139, B:S.166, B:S.203, B:S.203, B:S.204, B:N.245, B:K.246 Water bridges: B:S.203, B:S.203, B:G.205, B:K.246 Salt bridges: B:D.165, B:E.167, B:E.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chofor, R. et al., Synthesis and Bioactivity of beta-Substituted Fosmidomycin Analogues Targeting 1-Deoxy-d-xylulose-5-phosphate Reductoisomerase. J.Med.Chem. (2015)

Release Date

2015-04-01

Peptides

1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplast: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplast

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